RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 ZNF738Q8NE65 137 aa12.07□□□□□ -0.48
LSM1-204ENST00000522515 CLEC5AQ9NY25 188 aa12.07□□□□□ -0.48
LSM1-204ENST00000522515 GNG13Q9P2W3 67 aa12.07□□□□□ -0.48
LSM1-204ENST00000522515 PRAC2D3DTV9 90 aa12.06□□□□□ -0.48
LSM1-204ENST00000522515 F6UB75 175 aa12.06□□□□□ -0.48
LSM1-204ENST00000522515 RPUSD4Q96CM3 377 aaKnown RBP12.06□□□□□ -0.48
LSM1-204ENST00000522515 CITED4Q96RK1 184 aa12.06□□□□□ -0.48
LSM1-204ENST00000522515 AURKAIP1Q9NWT8 199 aaPredicted RBP12.06□□□□□ -0.48
LSM1-204ENST00000522515 KNCNA6PVL3 124 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 PPT1P50897 306 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 GDF5OSQ5U4N7 250 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 PRELID1Q9Y255 219 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 ATP5G3P48201 142 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 PMS2P11Q13670 270 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 CST9LP1Q5W188 147 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 MRPL53Q96EL3 112 aaKnown RBP12.05□□□□□ -0.48
LSM1-204ENST00000522515 MANBALQ9NQG1 85 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 ARL2-SNX15V9GYD0 113 aa12.05□□□□□ -0.48
LSM1-204ENST00000522515 SLC25A5P05141 298 aaKnown RBP12.04□□□□□ -0.48
LSM1-204ENST00000522515 ZNF705DP0CH99 300 aaPredicted RBP12.04□□□□□ -0.48
LSM1-204ENST00000522515 ZNF705BP0CI00 300 aaPredicted RBP12.04□□□□□ -0.48
LSM1-204ENST00000522515 ACTL10Q5JWF8 245 aa12.04□□□□□ -0.48
LSM1-204ENST00000522515 SAV1Q9H4B6 383 aaPredicted RBP12.04□□□□□ -0.48
LSM1-204ENST00000522515 RAB14P61106 215 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 GNG5P63218 68 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 HAGHQ16775 308 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 FOXI2Q6ZQN5 318 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 CCDC28AQ8IWP9 274 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 RXFP4Q8TDU9 374 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 NKX6-2Q9C056 277 aaPredicted RBP12.03□□□□□ -0.48
LSM1-204ENST00000522515 RPH3ALQ9UNE2 315 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 DNAH3Q8TD57 4116 aa12.03□□□□□ -0.48
LSM1-204ENST00000522515 A0A0J9YX75 114 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 RGS13O14921 159 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 CSN1S1P47710 185 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 EBLN2Q6P2I7 272 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 C5orf17Q8NAS9 161 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 OR8A1Q8NGG7 326 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 CMTM2Q8TAZ6 248 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 SRD5A3Q9H8P0 318 aa12.02□□□□□ -0.49
LSM1-204ENST00000522515 IGKV2-40A0A087WW87 121 aaPredicted RBP12.01□□□□□ -0.49
LSM1-204ENST00000522515 DIRC3C9JPN6 131 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 C11orf94C9JXX5 98 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 K7EIL1 84 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 IFNA1P01562 189 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 IGKV2D-40P01614 121 aaPredicted RBP12.01□□□□□ -0.49
LSM1-204ENST00000522515 IGHV4-30-4P0DP06 118 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 BCL2P10415 239 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 HLA-DRB4P13762 266 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 CLLU1Q5K131 121 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 EPDR1Q9UM22 224 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 HLA-DRB4X5D2U9 266 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 AGRNO00468 2067 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 H3BMM0 161 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 TCRAP04437 139 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 HIST1H1AQ02539 215 aaPredicted RBP12.01□□□□□ -0.49
LSM1-204ENST00000522515 STHQ8IWL8 128 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 ARL6IP6Q8N6S5 226 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 RARRES2Q99969 163 aa12.01□□□□□ -0.49
LSM1-204ENST00000522515 LOC102723971A0A1B0GUV8 181 aa12□□□□□ -0.49
LSM1-204ENST00000522515 RBFOX3A6NFN3 312 aa12□□□□□ -0.49
LSM1-204ENST00000522515 IGKV3-20P01619 116 aa12□□□□□ -0.49
LSM1-204ENST00000522515 CNN1P51911 297 aaKnown RBP12□□□□□ -0.49
LSM1-204ENST00000522515 MEF2BQ02080 365 aaPredicted RBP12□□□□□ -0.49
LSM1-204ENST00000522515 GOLT1AQ6ZVE7 132 aa12□□□□□ -0.49
LSM1-204ENST00000522515 OR4B1Q8NGF8 309 aa12□□□□□ -0.49
LSM1-204ENST00000522515 OR10J6PQ8NGY7 276 aa12□□□□□ -0.49
LSM1-204ENST00000522515 FAM210AQ96ND0 272 aa12□□□□□ -0.49
LSM1-204ENST00000522515 TUBA4BQ9H853 241 aa12□□□□□ -0.49
LSM1-204ENST00000522515 VAX2Q9UIW0 290 aa12□□□□□ -0.49
LSM1-204ENST00000522515 ERCC8Q13216 396 aa11.99□□□□□ -0.49
LSM1-204ENST00000522515 TRPT1Q86TN4 253 aaKnown RBP11.99□□□□□ -0.49
LSM1-204ENST00000522515 VGLL1Q99990 258 aa11.99□□□□□ -0.49
LSM1-204ENST00000522515 RBMY1BA6NDE4 496 aaKnown RBP11.98□□□□□ -0.49
LSM1-204ENST00000522515 RBMY1EA6NEQ0 496 aaKnown RBP11.98□□□□□ -0.49
LSM1-204ENST00000522515 NPIPB6E9PJ23 425 aa11.98□□□□□ -0.49
LSM1-204ENST00000522515 DUSP14O95147 198 aaKnown RBP11.98□□□□□ -0.49
LSM1-204ENST00000522515 RBMY1DP0C7P1 496 aaKnown RBP11.98□□□□□ -0.49
LSM1-204ENST00000522515 RPL35AP18077 110 aaKnown RBP11.98□□□□□ -0.49
LSM1-204ENST00000522515 TOR2AQ5JU69 321 aa11.98□□□□□ -0.49
LSM1-204ENST00000522515 TXNDC17Q9BRA2 123 aa11.98□□□□□ -0.49
LSM1-204ENST00000522515 ATG101Q9BSB4 218 aa11.98□□□□□ -0.49
LSM1-204ENST00000522515 AGPAT4-IT1Q9H0P7 198 aa11.98□□□□□ -0.49
LSM1-204ENST00000522515 TRAV8-1A0A0A6YYK1 113 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 SCO2A0A1W2PP80 73 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 PEX7O00628 323 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 TAGLN2P37802 199 aaKnown RBP11.97□□□□□ -0.49
LSM1-204ENST00000522515 ZNF506Q5JVG8 444 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 C9orf47Q6ZRZ4 202 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 CYB561D1Q8N8Q1 229 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 HIST1H2BAQ96A08 127 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 LINC00479Q96M42 142 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 TCEAL7Q9BRU2 100 aa11.97□□□□□ -0.49
LSM1-204ENST00000522515 EIF5A2Q9GZV4 153 aaKnown RBP11.97□□□□□ -0.49
LSM1-204ENST00000522515 RBAKDNA6NC62 111 aa11.96□□□□□ -0.49
LSM1-204ENST00000522515 A8MTW9 85 aa11.96□□□□□ -0.49
LSM1-204ENST00000522515 A8MZ25 164 aa11.96□□□□□ -0.49
LSM1-204ENST00000522515 SGK494Q96LW2 274 aa11.96□□□□□ -0.49
LSM1-204ENST00000522515 SERTM2A0A1B0GWG4 89 aa11.96□□□□□ -0.5
LSM1-204ENST00000522515 F6UZH7 168 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms