RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 ZNF833PQ6ZTB9 187 aa11.11□□□□□ -0.63
SYNPO-205ENST00000522122 IGLV1-44P01699 117 aa11.11□□□□□ -0.63
SYNPO-205ENST00000522122 DUX4L9Q6RFH8 374 aaPredicted RBP11.11□□□□□ -0.63
SYNPO-205ENST00000522122 FAM231DQ6ZW35 169 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 TMEM158Q8WZ71 300 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 DPH3P1Q9H4G8 78 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 SMKR1H3BMG3 65 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 CD28P10747 220 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 ZNF295-AS1Q8N0V1 137 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 TRAV8-2A0A0B4J237 113 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 TMEM8BA6NDV4 472 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 TSPAN13O95857 204 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 BDP1A6H8Y1 2624 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 PRR20EP86478 221 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 PRR20CP86479 221 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 PRR20DP86480 221 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 PRR20BP86481 221 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 PRR20AP86496 221 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 GAGE13Q4V321 117 aa11.1□□□□□ -0.63
SYNPO-205ENST00000522122 IGKV3D-20A0A0C4DH25 116 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 C11orf53Q8IXP5 236 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 IGLC2P0DOY2 106 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 IGLC3P0DOY3 106 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 WT1-ASQ06250 92 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 STHQ8IWL8 128 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 LSM4Q9Y4Z0 139 aaKnown RBP11.09□□□□□ -0.63
SYNPO-205ENST00000522122 H3BUX3 64 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 TDGF1P13385 188 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 MED13Q9UHV7 2174 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 SELENOKQ9Y6D0 94 aa11.09□□□□□ -0.63
SYNPO-205ENST00000522122 CD5LO43866 347 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 ZNF688P0C7X2 276 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 BRD3OSQ6XYD6 125 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 TRBV7-9A0A0J9YWB2 115 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 IGLV3-9A0A075B6K5 115 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 RIPPLY3P57055 190 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 C10orf126Q8N4M7 172 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 C14orf178Q8N769 122 aaPredicted RBP11.08□□□□□ -0.64
SYNPO-205ENST00000522122 COX11Q9Y6N1 276 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 A0A1W2PRX2 142 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 NPSP0C0P6 89 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 LOXP28300 417 aaPredicted RBP11.08□□□□□ -0.64
SYNPO-205ENST00000522122 LINC00311Q8N616 119 aa11.08□□□□□ -0.64
SYNPO-205ENST00000522122 TRBV19A0A075B6N1 114 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 A8MWV9 139 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 SLAQ13239 276 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 TMEM75Q8N9X5 138 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 SIGMAR1Q99720 223 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 VCYO14598 125 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 POU2AF1Q16633 256 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 CPAMD8Q8IZJ3 1885 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 CEACAM8P31997 349 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-205ENST00000522122 ZNF876PQ49A33 203 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 USMG5Q96IX5 58 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 COL5A1P20908 1838 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-205ENST00000522122 TMEM213A2RRL7 107 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 KIR3DS1Q14943 382 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 YAE1D1Q9NRH1 226 aa11.07□□□□□ -0.64
SYNPO-205ENST00000522122 P0C879 139 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 SAA4P35542 130 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 TEX36Q5VZQ5 186 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 IGFL3Q6UXB1 125 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 IGHV4-39P01824 125 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 WIPF2Q8TF74 440 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-205ENST00000522122 IGHV3-64A0A075B6Q5 118 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 FCN3O75636 299 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 STPG4Q8N801 248 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 ERG28Q9UKR5 140 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 PLCE1Q9P212 2302 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 NUPR1O60356 82 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 TNFRSF6BO95407 300 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 PAX2Q02962 417 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 ERCC8Q13216 396 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 FAM104BQ5XKR9 115 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 ADAMTS9Q9P2N4 1935 aa11.06□□□□□ -0.64
SYNPO-205ENST00000522122 TRAV12-3A0A0B4J271 114 aa11.05□□□□□ -0.64
SYNPO-205ENST00000522122 NDUFB8O95169 186 aa11.05□□□□□ -0.64
SYNPO-205ENST00000522122 RCHY1Q96PM5 261 aa11.05□□□□□ -0.64
SYNPO-205ENST00000522122 RHPN1-AS1Q9BWJ2 59 aa11.05□□□□□ -0.64
SYNPO-205ENST00000522122 CSTL1Q9H114 145 aa11.05□□□□□ -0.64
SYNPO-205ENST00000522122 B4DSR2 109 aa11.05□□□□□ -0.64
SYNPO-205ENST00000522122 BPESC1Q9GZL8 116 aa11.05□□□□□ -0.64
SYNPO-205ENST00000522122 TMEM238C9JI98 176 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 NCOA6Q14686 2063 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-205ENST00000522122 FAM223BA6NKX1 122 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 FAM223AQ8IWN6 122 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 DEFB104AQ8WTQ1 72 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 GAGE12BA1L429 117 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 PRSS46E5RG02 174 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 DSCR9P59020 149 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 TPSG1Q9NRR2 321 aa11.04□□□□□ -0.64
SYNPO-205ENST00000522122 ESDP10768 282 aa11.03□□□□□ -0.64
SYNPO-205ENST00000522122 KLF5Q13887 457 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-205ENST00000522122 A0A0U1RRA0 63 aa11.03□□□□□ -0.64
SYNPO-205ENST00000522122 GOLGB1Q14789 3259 aaKnown RBP11.03□□□□□ -0.64
SYNPO-205ENST00000522122 PLEKHB2Q96CS7 222 aa11.03□□□□□ -0.64
SYNPO-205ENST00000522122 FREM1Q5H8C1 2179 aa11.03□□□□□ -0.64
SYNPO-205ENST00000522122 RBMY1BA6NDE4 496 aaKnown RBP11.03□□□□□ -0.64
SYNPO-205ENST00000522122 RBMY1EA6NEQ0 496 aaKnown RBP11.03□□□□□ -0.64
SYNPO-205ENST00000522122 RBMY1DP0C7P1 496 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms