RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 NF1P21359 2839 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 A0A1W2PRX2 142 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 TMEM213A2RRL7 107 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 C2orf70A6NJV1 201 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 SLC17A3O00476 420 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 SLURP1P55000 103 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 GNG5P63218 68 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 BTN1A1Q13410 526 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 GOLT1AQ6ZVE7 132 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 LINC01551Q86U37 167 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 NDUFA11Q86Y39 141 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 OR9G4Q8NGQ1 327 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 TUBA4BQ9H853 241 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 ZFP30Q9Y2G7 519 aa12.16□□□□□ -0.46
NUP54-214ENST00000514307 CXorf65A6NEN9 183 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 DNASE2O00115 360 aaPredicted RBP12.15□□□□□ -0.46
NUP54-214ENST00000514307 ISLRO14498 428 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 TSPAN4O14817 238 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 RIPPLY3P57055 190 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 PSG3Q16557 428 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 DEFB136Q30KP8 78 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 CENPWQ5EE01 88 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 TMEM75Q8N9X5 138 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 DLX4Q92988 240 aaPredicted RBP12.15□□□□□ -0.46
NUP54-214ENST00000514307 RAX2Q96IS3 184 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 LINC00479Q96M42 142 aa12.15□□□□□ -0.46
NUP54-214ENST00000514307 TRAV34A0A0B4J273 112 aa12.14□□□□□ -0.47
NUP54-214ENST00000514307 RBAKDNA6NC62 111 aa12.14□□□□□ -0.47
NUP54-214ENST00000514307 SAPCD1Q5SSQ6 148 aa12.14□□□□□ -0.47
NUP54-214ENST00000514307 C15orf54Q8N8G6 183 aa12.14□□□□□ -0.47
NUP54-214ENST00000514307 OVOL1O14753 267 aa12.13□□□□□ -0.47
NUP54-214ENST00000514307 SCO1O75880 301 aa12.13□□□□□ -0.47
NUP54-214ENST00000514307 GCGP01275 180 aa12.13□□□□□ -0.47
NUP54-214ENST00000514307 FLI1Q01543 452 aaPredicted RBP12.13□□□□□ -0.47
NUP54-214ENST00000514307 FHL3Q13643 280 aa12.13□□□□□ -0.47
NUP54-214ENST00000514307 M0R3E3 92 aa12.12□□□□□ -0.47
NUP54-214ENST00000514307 MGST1P10620 155 aaKnown RBP12.12□□□□□ -0.47
NUP54-214ENST00000514307 RBPMS2Q6ZRY4 209 aaKnown RBP12.12□□□□□ -0.47
NUP54-214ENST00000514307 PRNTQ86SH4 94 aa12.12□□□□□ -0.47
NUP54-214ENST00000514307 OR10G8Q8NGN5 311 aa12.12□□□□□ -0.47
NUP54-214ENST00000514307 ISOC2Q96AB3 205 aa12.12□□□□□ -0.47
NUP54-214ENST00000514307 IGF2BP2-AS1Q96M15 143 aa12.12□□□□□ -0.47
NUP54-214ENST00000514307 DUX3Q96PT4 197 aa12.12□□□□□ -0.47
NUP54-214ENST00000514307 PSG8Q9UQ74 426 aa12.12□□□□□ -0.47
NUP54-214ENST00000514307 TRBV20OR9-2A0A075B6H5 130 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 TRAV8-2A0A0B4J237 113 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 H7BYZ3 331 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 LTAP01374 205 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 ERVFC1-1P60608 527 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 SNRPD3P62318 126 aaKnown RBP12.11□□□□□ -0.47
NUP54-214ENST00000514307 NSUN5P1Q3KNT7 163 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 RNF212Q495C1 297 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 IGFL4Q6B9Z1 124 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 TMEM183AQ8IXX5 376 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 DYNLRB2Q8TF09 96 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 DAZAP1Q96EP5 407 aaKnown RBP12.11□□□□□ -0.47
NUP54-214ENST00000514307 SFRP2Q96HF1 295 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 NDFIP1Q9BT67 221 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 SIGLEC8Q9NYZ4 499 aa12.11□□□□□ -0.47
NUP54-214ENST00000514307 TRAV2A0A0B4J234 112 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 TRAV25A0A0B4J276 109 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 CSN3P07498 182 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 S100PP25815 95 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 SRSF2Q01130 221 aaKnown RBP12.1□□□□□ -0.47
NUP54-214ENST00000514307 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.1□□□□□ -0.47
NUP54-214ENST00000514307 ZNF738Q8NE65 137 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 OR10J6PQ8NGY7 276 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 LINC00477Q96M19 166 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 MS4A6AQ9H2W1 248 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 OSTCQ9NRP0 149 aa12.1□□□□□ -0.47
NUP54-214ENST00000514307 IGKV3-7A0A075B6H7 116 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 PGPEP1LA6NFU8 196 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 ZNF705FA8MVS1 300 aaPredicted RBP12.09□□□□□ -0.47
NUP54-214ENST00000514307 TMEM78Q5T7P6 136 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 WFDC3Q8IUB2 231 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 GBGT1Q8N5D6 347 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 RNF182Q8N6D2 247 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 SGK494Q96LW2 274 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 IMMP2LQ96T52 175 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 MLST8Q9BVC4 326 aa12.09□□□□□ -0.47
NUP54-214ENST00000514307 AURKAIP1Q9NWT8 199 aaPredicted RBP12.09□□□□□ -0.47
NUP54-214ENST00000514307 SOCS3O14543 225 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 IGLV2-11P01706 119 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 IGLV2-8P01709 118 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 HLA-DMBP28068 263 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 DEFB114Q30KQ6 69 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 TMEM88Q6PEY1 159 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 KCNIP4Q6PIL6 250 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 FAM231DQ6ZW35 169 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 BTF3L4Q96K17 158 aa12.08□□□□□ -0.48
NUP54-214ENST00000514307 K7EN84 100 aa12.07□□□□□ -0.48
NUP54-214ENST00000514307 CT45A10P0DMU9 189 aa12.07□□□□□ -0.48
NUP54-214ENST00000514307 CMC4P56277 68 aaPredicted RBP12.07□□□□□ -0.48
NUP54-214ENST00000514307 C9orf47Q6ZRZ4 202 aa12.07□□□□□ -0.48
NUP54-214ENST00000514307 Q86TA4 180 aa12.07□□□□□ -0.48
NUP54-214ENST00000514307 DCANP1Q8TF63 244 aa12.07□□□□□ -0.48
NUP54-214ENST00000514307 PPP1R14DQ9NXH3 145 aa12.07□□□□□ -0.48
NUP54-214ENST00000514307 ANK3Q12955 4377 aaKnown RBP12.06□□□□□ -0.48
NUP54-214ENST00000514307 IGKV2-40A0A087WW87 121 aaPredicted RBP12.06□□□□□ -0.48
NUP54-214ENST00000514307 TRAV8-1A0A0A6YYK1 113 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms