RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 SERF2P84101 59 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 ZNF117Q03924 483 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 SFTA2Q6UW10 78 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 MMD2Q8IY49 270 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 PLEKHB2Q96CS7 222 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 CHD9Q3L8U1 2897 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 OVOL1O14753 267 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 SLC38A11Q08AI6 406 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 FOXI1Q12951 378 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 ZIC1Q15915 447 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 FAM90A1Q86YD7 464 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 TSKUQ8WUA8 353 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 RNF126Q9BV68 326 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 M0R3E3 92 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 TRIAP1O43715 76 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 NDUFS5O43920 106 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 CECR9P0C854 216 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 PSG7Q13046 419 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 ORMDL2Q53FV1 153 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 SPATA31B1PQ5VZV4 182 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 LCN12Q6JVE5 192 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 C1orf229Q6ZS94 237 aaPredicted RBP4.15□□□□□ -1.75
USP54-216ENST00000498143 HOGA1Q86XE5 327 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 OCC1Q8TAD7 63 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 TIMM17AQ99595 171 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 MRPL32Q9BYC8 188 aaKnown RBP4.15□□□□□ -1.75
USP54-216ENST00000498143 SLC25A22Q9H936 323 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 CYTL1Q9NRR1 136 aa4.15□□□□□ -1.75
USP54-216ENST00000498143 TMED7-TICAM2A0A0A6YYA0 188 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 ZNF708P17019 499 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 MST1LQ2TV78 715 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 C4orf45Q96LM5 186 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 VSIRQ9H7M9 311 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 SELENOKQ9Y6D0 94 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 TRBV6-7A0A0A0MS04 114 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 CTXND1A0A1B0GTU2 59 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 FAM90A8PA6NJQ4 464 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 CCDC179H3BU77 68 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 CSN3P07498 182 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 FAM90A13PP0C7W8 464 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 FAM90A24PP0C7X0 464 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 RND2P52198 227 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 ATP5EP56381 51 aaPredicted RBP4.14□□□□□ -1.75
USP54-216ENST00000498143 CD226Q15762 336 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 RRN3P1Q2M238 152 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 Q6Q795 121 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 BCL6BQ8N143 479 aaPredicted RBP4.14□□□□□ -1.75
USP54-216ENST00000498143 AICDAQ9GZX7 198 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 DOCK5Q9H7D0 1870 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 TRAV8-6A0A0B4J262 113 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 C9JQL5 133 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 TAX1BP3O14907 124 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 IAPPP10997 89 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 ZNF134P52741 427 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 RPL30P62888 115 aaKnown RBP4.14□□□□□ -1.75
USP54-216ENST00000498143 ICAM4Q14773 271 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 C1QL2Q7Z5L3 287 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 TEN1Q86WV5 123 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 IL1F10Q8WWZ1 152 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 MUC22E2RYF6 1773 aaPredicted RBP4.14□□□□□ -1.75
USP54-216ENST00000498143 FRYLO94915 3013 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 H3BMM0 161 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 GYPEP15421 78 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 ATXN8Q156A1 80 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 C9orf66Q5T8R8 295 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 UBE2WQ96B02 151 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 UBE2E2Q96LR5 201 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 YPEL2Q96QA6 119 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 SDF2Q99470 211 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 SCN8AQ9UQD0 1980 aa4.14□□□□□ -1.75
USP54-216ENST00000498143 TNRC6AQ8NDV7 1962 aaKnown RBP4.13□□□□□ -1.75
USP54-216ENST00000498143 FAM229AH3BQW9 127 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 C1orf105O95561 183 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 MT-ATP8P03928 68 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 RNASE1P07998 156 aaKnown RBP4.13□□□□□ -1.75
USP54-216ENST00000498143 ZAR1Q86SH2 424 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 TMEM252Q8N6L7 170 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 OSR1Q8TAX0 266 aaPredicted RBP4.13□□□□□ -1.75
USP54-216ENST00000498143 TRAV12-2A0A075B6T6 113 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 M0R2P5 195 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 DUSP14O95147 198 aaKnown RBP4.13□□□□□ -1.75
USP54-216ENST00000498143 WISP3O95389 354 aaPredicted RBP4.13□□□□□ -1.75
USP54-216ENST00000498143 C3orf79P0CE67 100 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 COX7A1P24310 79 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 WDR38Q5JTN6 314 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 TMEM256Q8N2U0 113 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 DPH3Q96FX2 82 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 ZNF414Q96IQ9 312 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 YPEL4Q96NS1 127 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 HDHD3Q9BSH5 251 aaPredicted RBP4.13□□□□□ -1.75
USP54-216ENST00000498143 TP53TG1Q9Y2A0 90 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 IGHV3-15A0A0B4J1V0 119 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 H0YIZ8 118 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 SOCS1O15524 211 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 COX7A2P2O60397 106 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 IGHG2P01859 326 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 ZNF260Q3ZCT1 412 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 LYZL2Q7Z4W2 148 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 R4GMQ9 66 aa4.13□□□□□ -1.75
USP54-216ENST00000498143 PTPRSQ13332 1948 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms