RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	TRAV8-1	A0A0A6YYK1	113 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	BORCS7-ASMT	A0A0B4J1R7	106 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	TRAV1-2	A0A0B4J238	106 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	IGHV3-66	A0A0C4DH42	116 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	MAP1LC3B2	A6NCE7	125 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	INS-IGF2	F8WCM5	200 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	GEMIN2	O14893	280 aa	Known RBP	2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	TAX1BP3	O14907	124 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	DEGS1	O15121	323 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF207	O43670	478 aa	Known RBP	2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	HYPM	O75409	117 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	MAS1	P04201	325 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	SEC11B	P0C7V7	166 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	GUCA1A	P43080	201 aa	Predicted RBP	2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	PSMB3	P49720	205 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	CAV3	P56539	151 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	TPPP2	P59282	170 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	TAS2R20	P59543	309 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	ELOC	Q15369	112 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	MPV17L2	Q567V2	206 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	KPRP	Q5T749	579 aa	Predicted RBP	2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	AGTRAP	Q6RW13	159 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	SBSN	Q6UWP8	590 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF101	Q8IZC7	436 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF645	Q8N7E2	425 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	TMEM75	Q8N9X5	138 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	OR2M3	Q8NG83	312 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	OR52R1	Q8NGF1	315 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	OR8B12	Q8NGG6	310 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	SLC25A40	Q8TBP6	338 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	CAMK2N2	Q96S95	79 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	NDFIP1	Q9BT67	221 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	DERL1	Q9BUN8	251 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	EFCAB11	Q9BUY7	163 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	TSSK6	Q9BXA6	273 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	NMES1	Q9C002	83 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	MAP1LC3B	Q9GZQ8	125 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	GTSF1L	Q9H1H1	148 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	NAT8B	Q9UHF3	227 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	HS3ST2	Q9Y278	367 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	FIS1	Q9Y3D6	152 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	CACNA1A	O00555	2505 aa		2.95	□□□□□ -1.94
SF3B1-212	ENST00000496458	ACACA	Q13085	2346 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	DSCAML1	Q8TD84	2053 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	IGF2R	P11717	2491 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	IGLV2-18	A0A075B6J9	118 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458		A0A087WX48	190 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	IGHV1OR15-9	A0A0B4J2B8	117 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF850	A8MQ14	1090 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	SOCS1	O15524	211 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	YPEL3	P61236	119 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	LCN6	P62502	163 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	DYNLT1	P63172	113 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	PSG9	Q00887	426 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	MEF2B	Q02080	365 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	PMCHL1	Q16048	86 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	AMMECR1L	Q6DCA0	310 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	HMGN2P46	Q86SG4	172 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	OR11H6	Q8NGC7	330 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	OR51T1	Q8NGJ9	327 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	FAM57A	Q8TBR7	257 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	PPP1R1C	Q8WVI7	109 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	APOBEC3D	Q96AK3	386 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	DNAJC30	Q96LL9	226 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	DOHH	Q9BU89	302 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	SNRNP25	Q9BV90	132 aa	Known RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	DPY30	Q9C005	99 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	FGF23	Q9GZV9	251 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	LPAR5	Q9H1C0	372 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	RNASE7	Q9H1E1	156 aa	Known RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	SH3BGRL3	Q9H299	93 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	CYSLTR1	Q9Y271	337 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF706	Q9Y5V0	76 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	PXMP4	Q9Y6I8	212 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	ASXL3	Q9C0F0	2248 aa		2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	RP1L1	Q8IWN7	2480 aa	Predicted RBP	2.94	□□□□□ -1.94
SF3B1-212	ENST00000496458	FANCM	Q8IYD8	2048 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	TRPM6	Q9BX84	2022 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	DSP	P15924	2871 aa	Known RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	PRRC2C	Q9Y520	2896 aa	Known RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	SHROOM3	Q8TF72	1996 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF106	Q9H2Y7	1883 aa	Known RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458		A0A087WUU8	490 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	IGHV3-72	A0A0B4J1Y9	119 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	TRAV26-2	A0A0B4J265	109 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF727	A8MUV8	499 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458		K7EP34	96 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	ZNF682	O95780	498 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	IGHV3-11	P01762	117 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	HLA-DRB1	P01911	266 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	DBI	P07108	87 aa	Known RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	SRP19	P09132	144 aa	Known RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	AKAIN1	P0CW23	69 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	PPIB	P23284	216 aa	Known RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	NPY1R	P25929	384 aa		2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	SRP14	P37108	136 aa	Known RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	HINT1	P49773	126 aa	Predicted RBP	2.93	□□□□□ -1.94
SF3B1-212	ENST00000496458	HERVK_113	P63121	156 aa		2.93	□□□□□ -1.94

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms