RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HCP5Q6MZN7 132 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 TCF24Q7RTU0 167 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 PPTC7Q8NI37 304 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 THEM6Q8WUY1 208 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 CANT1Q8WVQ1 401 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 MRPL32Q9BYC8 188 aaKnown RBP2.39□□□□□ -2.03
VPS13A-212ENST00000493341 BAIAP2Q9UQB8 552 aa2.39□□□□□ -2.03
VPS13A-212ENST00000493341 MYH7BA7E2Y1 1941 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 CCDC171Q6TFL3 1326 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 GBF1Q92538 1859 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 A0A0D9SFI3 127 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 OR51F1A6NGY5 319 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 SHBGP04278 402 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 METTL15P1P0C7V9 234 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 HES1Q14469 280 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 RTL8BQ17RB0 113 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 TMEM35BQ8NCS4 154 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 AQP3Q92482 292 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 CARD19Q96LW7 228 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 YPEL2Q96QA6 119 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 RTL8AQ9BWD3 113 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 LRTM1Q9HBL6 345 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 LAMTOR3Q9UHA4 124 aa2.38□□□□□ -2.03
VPS13A-212ENST00000493341 DOCK4Q8N1I0 1966 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 TLCD2A6NGC4 264 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 PMP2P02689 132 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 CLPSP04118 112 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 MSMO1Q15800 293 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 C22orf39Q6P5X5 142 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 SOSTDC1Q6X4U4 206 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 BORCS8Q96FH0 119 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 IGKV3D-11A0A0A0MRZ8 115 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 TRGV10A0A0A0MS01 117 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 A0A0G2JQZ4 141 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 NDUFB3O43676 98 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 CXCL1P09341 107 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 Q6ZTI0 123 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 CCDC115Q96NT0 180 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 PRO2289Q9P1D8 64 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 Q9Y3F1 56 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 MYO9BQ13459 2157 aa2.37□□□□□ -2.03
VPS13A-212ENST00000493341 CPAMD8Q8IZJ3 1885 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 COX6A1P12074 109 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 LGALS3P17931 250 aaKnown RBP2.36□□□□□ -2.03
VPS13A-212ENST00000493341 TMBIM6P55061 237 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 DYNLT1P63172 113 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 PDZD9Q8IXQ8 264 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 OR2T10Q8NGZ9 312 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 TEX37Q96LM6 180 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 PRADC1Q9BSG0 188 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 NPCDR1Q9BY65 106 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 TRAPPC2LQ9UL33 140 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 NUBP2Q9Y5Y2 271 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 COL4A6Q14031 1691 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 SIP14410 1827 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 PTPRBP23467 1997 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 DENND4CQ5VZ89 1909 aa2.36□□□□□ -2.03
VPS13A-212ENST00000493341 ARL5CA6NH57 179 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 IGKV4-1P06312 121 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 RPL7P18124 248 aaKnown RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 FKBP2P26885 142 aaKnown RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 DYNLT3P51808 116 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 NNATQ16517 81 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 TMEM155Q4W5P6 130 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 ANGPTL5Q86XS5 388 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 SLC30A7Q8NEW0 376 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 OR8B3Q8NGG8 313 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 OR9Q1Q8NGQ5 310 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 ZFHX2Q9C0A1 2572 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 MICAL3Q7RTP6 2002 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 IGKV1D-42A0A075B6H8 117 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 SDCBPO00560 298 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 FAM107AO95990 144 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 SCGB1A1P11684 91 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 S100A11P31949 105 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 EIF5AL1Q6IS14 154 aaKnown RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 BRD3OSQ6XYD6 125 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 Q6ZQT0 140 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 ISOC1Q96CN7 298 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 HSPB9Q9BQS6 159 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 ADAT1Q9BUB4 502 aaKnown RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 C6orf62Q9GZU0 229 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 LAMTOR2Q9Y2Q5 125 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 ATG2AQ2TAZ0 1938 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 MYH9P35579 1960 aaKnown RBP2.35□□□□□ -2.03
VPS13A-212ENST00000493341 CEP290O15078 2479 aa2.35□□□□□ -2.03
VPS13A-212ENST00000493341 CENPFP49454 3210 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 BAZ2BQ9UIF8 2168 aaKnown RBP2.34□□□□□ -2.03
VPS13A-212ENST00000493341 COL4A4P53420 1690 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-212ENST00000493341 TRGV4A0A0C4DH28 118 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 TRDV1A0A1B0GX56 115 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 C7orf71A4D174 169 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 ARPC5O15511 151 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 CTSDP07339 412 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-212ENST00000493341 ZNF345Q14585 488 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 ZNF181Q2M3W8 571 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 KRTAP13-3Q3SY46 172 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 BRMS1LQ5PSV4 323 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 C1orf140Q5VVS0 124 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms