RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 BOLA2-SMG1P6H3BVE0 249 aa12.96□□□□□ -0.33
COL9A3-214ENST00000490398 EIF3GO75821 320 aaKnown RBP eCLIP12.96□□□□□ -0.33
COL9A3-214ENST00000490398 C2CD4CQ8TF44 421 aa12.96□□□□□ -0.33
COL9A3-214ENST00000490398 TRBV19A0A075B6N1 114 aa12.95□□□□□ -0.34
COL9A3-214ENST00000490398 SMIM9A6NGZ8 99 aa12.95□□□□□ -0.34
COL9A3-214ENST00000490398 ZNF705GA8MUZ8 300 aaPredicted RBP12.95□□□□□ -0.34
COL9A3-214ENST00000490398 IGLL5B9A064 214 aa12.95□□□□□ -0.34
COL9A3-214ENST00000490398 M0R3E3 92 aa12.95□□□□□ -0.34
COL9A3-214ENST00000490398 Q5BKY6 102 aa12.95□□□□□ -0.34
COL9A3-214ENST00000490398 TMEM14CQ9P0S9 112 aa12.95□□□□□ -0.34
COL9A3-214ENST00000490398 APLNQ9ULZ1 77 aa12.95□□□□□ -0.34
COL9A3-214ENST00000490398 LOC102723971A0A1B0GUV8 181 aa12.94□□□□□ -0.34
COL9A3-214ENST00000490398 INSP01308 110 aa12.94□□□□□ -0.34
COL9A3-214ENST00000490398 HBE1P02100 147 aa12.94□□□□□ -0.34
COL9A3-214ENST00000490398 PET100P0DJ07 73 aa12.94□□□□□ -0.34
COL9A3-214ENST00000490398 AZU1P20160 251 aa12.94□□□□□ -0.34
COL9A3-214ENST00000490398 DKK2Q9UBU2 259 aa12.94□□□□□ -0.34
COL9A3-214ENST00000490398 TRAV10A0A0B4J240 114 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 AMBPP02760 352 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 HIST1H1EP10412 219 aaKnown RBP12.93□□□□□ -0.34
COL9A3-214ENST00000490398 GUK1Q16774 197 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 RRN3P1Q2M238 152 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 FAM222AQ5U5X8 452 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 EXOC3-AS1Q8N2X6 119 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 RPP25LQ8N5L8 163 aaKnown RBP12.93□□□□□ -0.34
COL9A3-214ENST00000490398 BLNKQ8WV28 456 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 TMEM208Q9BTX3 173 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 MED28Q9H204 178 aa12.93□□□□□ -0.34
COL9A3-214ENST00000490398 YTHDF2Q9Y5A9 579 aaKnown RBP12.93□□□□□ -0.34
COL9A3-214ENST00000490398 C11orf94C9JXX5 98 aa12.92□□□□□ -0.34
COL9A3-214ENST00000490398 SPART-AS1P0CW21 52 aa12.92□□□□□ -0.34
COL9A3-214ENST00000490398 CT45A10P0DMU9 189 aa12.92□□□□□ -0.34
COL9A3-214ENST00000490398 ZNF503Q96F45 646 aa12.92□□□□□ -0.34
COL9A3-214ENST00000490398 PLAC8L1A1L4L8 177 aa12.91□□□□□ -0.34
COL9A3-214ENST00000490398 ZNF253O75346 499 aa12.91□□□□□ -0.34
COL9A3-214ENST00000490398 ERCC8Q13216 396 aa12.91□□□□□ -0.34
COL9A3-214ENST00000490398 FFAR4Q5NUL3 377 aa12.91□□□□□ -0.34
COL9A3-214ENST00000490398 FXYD5Q96DB9 178 aa12.91□□□□□ -0.34
COL9A3-214ENST00000490398 PPP1R14DQ9NXH3 145 aa12.91□□□□□ -0.34
COL9A3-214ENST00000490398 FUT9Q9Y231 359 aa12.91□□□□□ -0.34
COL9A3-214ENST00000490398 DEFB131BA0A096LNP1 70 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 TMEM189A5PLL7 270 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 NPIPB6E9PJ23 425 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 C17orf112F2Z3M2 114 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 OR10J4P0C629 311 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 GFI1BQ5VTD9 330 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 OR10J6PQ8NGY7 276 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 LINC01587Q99440 93 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 TIMM9Q9Y5J7 89 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 HECTD4Q9Y4D8 3996 aa12.9□□□□□ -0.34
COL9A3-214ENST00000490398 IGHV4-4A0A075B6R2 117 aa12.89□□□□□ -0.35
COL9A3-214ENST00000490398 J3KRW8 73 aa12.89□□□□□ -0.35
COL9A3-214ENST00000490398 IFNA5P01569 189 aa12.89□□□□□ -0.35
COL9A3-214ENST00000490398 CDKN1BP46527 198 aa12.89□□□□□ -0.35
COL9A3-214ENST00000490398 LGALS9CQ6DKI2 356 aa12.89□□□□□ -0.35
COL9A3-214ENST00000490398 PHYHIPLQ96FC7 376 aa12.89□□□□□ -0.35
COL9A3-214ENST00000490398 OR51M1Q9H341 326 aa12.89□□□□□ -0.35
COL9A3-214ENST00000490398 NBEAP1P0C6P0 100 aa12.88□□□□□ -0.35
COL9A3-214ENST00000490398 ICAM4Q14773 271 aa12.88□□□□□ -0.35
COL9A3-214ENST00000490398 SCGB1C1Q8TD33 95 aa12.88□□□□□ -0.35
COL9A3-214ENST00000490398 RNF141Q8WVD5 230 aa12.88□□□□□ -0.35
COL9A3-214ENST00000490398 NIPSNAP3BQ9BS92 247 aa12.88□□□□□ -0.35
COL9A3-214ENST00000490398 PAXXQ9BUH6 204 aa12.88□□□□□ -0.35
COL9A3-214ENST00000490398 MRPL32Q9BYC8 188 aaKnown RBP12.88□□□□□ -0.35
COL9A3-214ENST00000490398 KCNIP2Q9NS61 270 aa12.88□□□□□ -0.35
COL9A3-214ENST00000490398 HTN1P15515 57 aa12.87□□□□□ -0.35
COL9A3-214ENST00000490398 PDE6HQ13956 83 aa12.87□□□□□ -0.35
COL9A3-214ENST00000490398 FAM122CQ6P4D5 195 aa12.87□□□□□ -0.35
COL9A3-214ENST00000490398 MRPL53Q96EL3 112 aaKnown RBP12.87□□□□□ -0.35
COL9A3-214ENST00000490398 AGPAT4-IT1Q9H0P7 198 aa12.87□□□□□ -0.35
COL9A3-214ENST00000490398 IGKV2-40A0A087WW87 121 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-214ENST00000490398 IGKV2D-40P01614 121 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-214ENST00000490398 GIPP09681 153 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-214ENST00000490398 RAB2AP61019 212 aa12.86□□□□□ -0.35
COL9A3-214ENST00000490398 OXA1LQ15070 435 aa12.86□□□□□ -0.35
COL9A3-214ENST00000490398 RGS21Q2M5E4 152 aa12.86□□□□□ -0.35
COL9A3-214ENST00000490398 DYNC1H1Q14204 4646 aaKnown RBP12.85□□□□□ -0.35
COL9A3-214ENST00000490398 G3V3Q6 166 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 OR7C2O60412 319 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 HTN3P15516 51 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 TAS2R60P59551 318 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 FAM19A4Q96LR4 140 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 AQP10Q96PS8 301 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 VGLL1Q99990 258 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 PRELID1Q9Y255 219 aa12.85□□□□□ -0.35
COL9A3-214ENST00000490398 DNAH11Q96DT5 4516 aa12.84□□□□□ -0.35
COL9A3-214ENST00000490398 TRAV12-3A0A0B4J271 114 aa12.84□□□□□ -0.35
COL9A3-214ENST00000490398 TSPOP30536 169 aa12.84□□□□□ -0.35
COL9A3-214ENST00000490398 TCTAP57738 103 aa12.84□□□□□ -0.35
COL9A3-214ENST00000490398 ODF3Q96PU9 254 aa12.84□□□□□ -0.35
COL9A3-214ENST00000490398 RNF222A6NCQ9 220 aa12.83□□□□□ -0.36
COL9A3-214ENST00000490398 HMGB3O15347 200 aaKnown RBP12.83□□□□□ -0.36
COL9A3-214ENST00000490398 DAD1P61803 113 aa12.83□□□□□ -0.36
COL9A3-214ENST00000490398 RANP62826 216 aaKnown RBP12.83□□□□□ -0.36
COL9A3-214ENST00000490398 UBE2L3P68036 154 aaKnown RBP12.83□□□□□ -0.36
COL9A3-214ENST00000490398 CD300CQ08708 224 aa12.83□□□□□ -0.36
COL9A3-214ENST00000490398 PRR9Q5T870 116 aa12.83□□□□□ -0.36
COL9A3-214ENST00000490398 Q6ZQT7 251 aa12.83□□□□□ -0.36
COL9A3-214ENST00000490398 TMEM256Q8N2U0 113 aa12.83□□□□□ -0.36
COL9A3-214ENST00000490398 HSD17B11Q8NBQ5 300 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms