RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 KRTAP26-1Q6PEX3 210 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 DCUN1D2Q6PH85 259 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 POP5Q969H6 163 aaKnown RBP0.57□□□□□ -2.32
CPSF3-205ENST00000489629 PLEKHB2Q96CS7 222 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 YPEL2Q96QA6 119 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 PBDC1Q9BVG4 233 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 GGACTQ9BVM4 153 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 C14orf132Q9NPU4 83 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 CDC42SE1Q9NRR8 79 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 TAS2R7Q9NYW3 318 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 SMPXQ9UHP9 88 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 ATRQ13535 2644 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 WDR87Q6ZQQ6 2873 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 SPTAN1Q13813 2472 aaKnown RBP0.57□□□□□ -2.32
CPSF3-205ENST00000489629 RB1CC1Q8TDY2 1594 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 NCOR2Q9Y618 2525 aa0.57□□□□□ -2.32
CPSF3-205ENST00000489629 PKD1L1Q8TDX9 2849 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 FREM3P0C091 2139 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 CD109Q6YHK3 1445 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 ADGBQ8N7X0 1667 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 ACACBO00763 2458 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 CRYBG3Q68DQ2 2970 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 UTP20O75691 2785 aaKnown RBP0.56□□□□□ -2.32
CPSF3-205ENST00000489629 CITO14578 2027 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 FANCMQ8IYD8 2048 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 SYNE2Q8WXH0 6885 aaKnown RBP0.56□□□□□ -2.32
CPSF3-205ENST00000489629 A0A087WX48 190 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 A0A1W2PRE2 83 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 TCRBV4S1A1TA0A5B7 111 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 PPP5D1E7EU14 171 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 PGRMC1O00264 195 aaKnown RBP0.56□□□□□ -2.32
CPSF3-205ENST00000489629 GPR31O00270 319 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 CCL16O15467 120 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 GGCTO75223 188 aaKnown RBP0.56□□□□□ -2.32
CPSF3-205ENST00000489629 NEFHP12036 1026 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 ZNF25P17030 456 aaPredicted RBP0.56□□□□□ -2.32
CPSF3-205ENST00000489629 TCTAP57738 103 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 B2MP61769 119 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 PLCXD2Q0VAA5 305 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 TMEM78Q5T7P6 136 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 C1orf140Q5VVS0 124 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 TMEM14EPQ6UXP3 125 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 ANGPTL5Q86XS5 388 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 FAM19A2Q8N3H0 131 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 FAM24BQ8N5W8 94 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 NUP35Q8NFH5 326 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 OR4K15Q8NH41 348 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 DYDC1Q8WWB3 177 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 PATE1Q8WXA2 126 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 CHCHD1Q96BP2 118 aaKnown RBP0.56□□□□□ -2.32
CPSF3-205ENST00000489629 GPER1Q99527 375 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 BIN3Q9NQY0 253 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 MED11Q9P086 117 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 KLK9Q9UKQ9 250 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 C22orf24Q9Y442 160 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 SNURFQ9Y675 71 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 BOD1L1Q8NFC6 3051 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 NEBP20929 6669 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 XIRP1Q702N8 1843 aaKnown RBP0.56□□□□□ -2.32
CPSF3-205ENST00000489629 CEP295Q9C0D2 2601 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 FER1L6Q2WGJ9 1857 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 MADDQ8WXG6 1647 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 PTPRDP23468 1912 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 TENM2Q9NT68 2774 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 MYOM1P52179 1685 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 XIRP2A4UGR9 3374 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 CDH23Q9H251 3354 aa0.56□□□□□ -2.32
CPSF3-205ENST00000489629 UHRF1BP1Q6BDS2 1440 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 CHD1O14646 1710 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 IQSEC2Q5JU85 1478 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 BCL9LQ86UU0 1499 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 TPRP12270 2363 aaKnown RBP0.55□□□□□ -2.32
CPSF3-205ENST00000489629 EP300Q09472 2414 aaPredicted RBP0.55□□□□□ -2.32
CPSF3-205ENST00000489629 TET1Q8NFU7 2136 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 ADGRB2O60241 1585 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 FRMPD1Q5SYB0 1578 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 NRKQ7Z2Y5 1582 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 TRBV6-7A0A0A0MS04 114 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 MAP1LC3B2A6NCE7 125 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 E7EUB6 86 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 M0R2N4 97 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 GEMIN2O14893 280 aaKnown RBP0.55□□□□□ -2.32
CPSF3-205ENST00000489629 INE1O15225 51 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 CCL25O15444 150 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 KLF7O75840 302 aaPredicted RBP0.55□□□□□ -2.32
CPSF3-205ENST00000489629 SCGB2B2Q4G0G5 96 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 ZNF833PQ6ZTB9 187 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 PHF5AQ7RTV0 110 aaKnown RBP0.55□□□□□ -2.32
CPSF3-205ENST00000489629 PPTC7Q8NI37 304 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 TMEM254Q8TBM7 123 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 TEX47Q8TBZ9 253 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 MALSU1Q96EH3 234 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 RMND5BQ96G75 393 aaPredicted RBP0.55□□□□□ -2.32
CPSF3-205ENST00000489629 ODF3Q96PU9 254 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 MAP1LC3BQ9GZQ8 125 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 CACYBPQ9HB71 228 aaKnown RBP0.55□□□□□ -2.32
CPSF3-205ENST00000489629 LRTM1Q9HBL6 345 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 NIT2Q9NQR4 276 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 LY96Q9Y6Y9 160 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 KIAA0556O60303 1618 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms