RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 LINC00479Q96M42 142 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 ZNF331Q9NQX6 463 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-227ENST00000489156 UFC1Q9Y3C8 167 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 COLCA2A8K830 154 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 LGALS9O00182 355 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 ISLRO14498 428 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 CSN1S1P47710 185 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 BAGE2Q86Y30 109 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 IGHV3-66A0A0C4DH42 116 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 IGHV7-4-1A0A0J9YVY3 117 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 TRBV6-1A0A0K0K1D8 114 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 H7BYZ3 331 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 K7EN84 100 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 GCGP01275 180 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 IGLV2-8P01709 118 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 DUX3Q96PT4 197 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 AURKAIP1Q9NWT8 199 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-227ENST00000489156 CLEC5AQ9NY25 188 aa12.1□□□□□ -0.47
SYNE1-227ENST00000489156 IGHV3OR16-13A0A075B7E8 117 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 IGHV3-74A0A0B4J1X5 117 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 TRAV34A0A0B4J273 112 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 BMI1P35226 326 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 SHISA2Q6UWI4 295 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 REC114Q7Z4M0 266 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 YPEL4Q96NS1 127 aa12.09□□□□□ -0.47
SYNE1-227ENST00000489156 IGHV3-49A0A0A0MS15 119 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 FBLL1A6NHQ2 334 aaKnown RBP12.08□□□□□ -0.48
SYNE1-227ENST00000489156 DIRC3C9JPN6 131 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 LTAP01374 205 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 FAM24BQ8N5W8 94 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 TMEM75Q8N9X5 138 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 OR11H1Q8NG94 326 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 SMPXQ9UHP9 88 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 RPH3ALQ9UNE2 315 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 IGHV4OR15-8A0A075B7B6 117 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 A0A087WW49 117 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 A8MWP6 167 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 KRTAP21-3Q3LHN1 58 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 TM4SF20Q53R12 229 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 GOLT1AQ6ZVE7 132 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 IMMP2LQ96T52 175 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 RHPN1-AS1Q9BWJ2 59 aa12.08□□□□□ -0.48
SYNE1-227ENST00000489156 M0R3E3 92 aa12.07□□□□□ -0.48
SYNE1-227ENST00000489156 CHEK1O14757 476 aa12.07□□□□□ -0.48
SYNE1-227ENST00000489156 ELOBQ15370 118 aa12.07□□□□□ -0.48
SYNE1-227ENST00000489156 OR10G8Q8NGN5 311 aa12.07□□□□□ -0.48
SYNE1-227ENST00000489156 RAX2Q96IS3 184 aa12.07□□□□□ -0.48
SYNE1-227ENST00000489156 MLST8Q9BVC4 326 aa12.07□□□□□ -0.48
SYNE1-227ENST00000489156 BIN3Q9NQY0 253 aa12.07□□□□□ -0.48
SYNE1-227ENST00000489156 IGLV2-11P01706 119 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 HOXD3P31249 432 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-227ENST00000489156 PSG3Q16557 428 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 C1QL4Q86Z23 238 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 OR1N2Q8NGR9 330 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 MRPL53Q96EL3 112 aaKnown RBP12.06□□□□□ -0.48
SYNE1-227ENST00000489156 OSTCQ9NRP0 149 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 ZFP30Q9Y2G7 519 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 CCL24O00175 119 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 S100PP25815 95 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 ERVFC1-1P60608 527 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 KLF5Q13887 457 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-227ENST00000489156 DPF1Q92782 380 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 URGCP-MRPS24S4R325 110 aa12.06□□□□□ -0.48
SYNE1-227ENST00000489156 VWFP04275 2813 aa12.05□□□□□ -0.48
SYNE1-227ENST00000489156 LINC01619G3V211 115 aa12.05□□□□□ -0.48
SYNE1-227ENST00000489156 PFN1P07737 140 aaKnown RBP12.05□□□□□ -0.48
SYNE1-227ENST00000489156 MGST1P10620 155 aaKnown RBP12.05□□□□□ -0.48
SYNE1-227ENST00000489156 FLI1Q01543 452 aaPredicted RBP12.05□□□□□ -0.48
SYNE1-227ENST00000489156 OR5I1Q13606 314 aa12.05□□□□□ -0.48
SYNE1-227ENST00000489156 LCN12Q6JVE5 192 aa12.05□□□□□ -0.48
SYNE1-227ENST00000489156 Q86TA4 180 aa12.05□□□□□ -0.48
SYNE1-227ENST00000489156 TMEM183AQ8IXX5 376 aa12.05□□□□□ -0.48
SYNE1-227ENST00000489156 TRRAPQ9Y4A5 3859 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 TRBV24-1A0A075B6N3 115 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 TMEM213A2RRL7 107 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 SAMD13Q5VXD3 122 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 FAM231DQ6ZW35 169 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 TRAV8-1A0A0A6YYK1 113 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 RBAKDNA6NC62 111 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 SLURP1P55000 103 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 SYNJ2BPP57105 145 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 IBA57Q5T440 356 aaKnown RBP12.04□□□□□ -0.48
SYNE1-227ENST00000489156 KCNIP4Q6PIL6 250 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 SGK494Q96LW2 274 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 NRN1Q9NPD7 142 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 PSG8Q9UQ74 426 aa12.04□□□□□ -0.48
SYNE1-227ENST00000489156 FOLR2P14207 255 aa12.03□□□□□ -0.48
SYNE1-227ENST00000489156 RAB5AP20339 215 aa12.03□□□□□ -0.48
SYNE1-227ENST00000489156 BTF3L4Q96K17 158 aa12.03□□□□□ -0.48
SYNE1-227ENST00000489156 TMA7Q9Y2S6 64 aaKnown RBP12.03□□□□□ -0.48
SYNE1-227ENST00000489156 TRAV8-2A0A0B4J237 113 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 FHL3Q13643 280 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 PRNTQ86SH4 94 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 NHLRC2Q8NBF2 726 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 C16orf92Q96LL3 132 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 PYGO2Q9BRQ0 406 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 MLXQ9UH92 298 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 V9GYV3 84 aa12.02□□□□□ -0.48
SYNE1-227ENST00000489156 PF4P02776 101 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms