RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 LINC00322Q6ZN03 302 aaPredicted RBP6.48□□□□□ -1.37
USP4-213ENST00000488520 TMEM61Q8N0U2 210 aa6.48□□□□□ -1.37
USP4-213ENST00000488520 STOML3Q8TAV4 291 aa6.48□□□□□ -1.37
USP4-213ENST00000488520 GLMPQ8WWB7 406 aa6.48□□□□□ -1.37
USP4-213ENST00000488520 SCRT1Q9BWW7 348 aa6.48□□□□□ -1.37
USP4-213ENST00000488520 OR51M1Q9H341 326 aa6.48□□□□□ -1.37
USP4-213ENST00000488520 NRN1Q9NPD7 142 aa6.48□□□□□ -1.37
USP4-213ENST00000488520 CYTL1Q9NRR1 136 aa6.48□□□□□ -1.37
USP4-213ENST00000488520 TRAV2A0A0B4J234 112 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 TRAV5A0A0B4J249 113 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 OR11H12B2RN74 326 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 UMAD1C9J7I0 102 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 TEX46H3BTG2 121 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 SPP1P10451 314 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 CDC34P49427 236 aaPredicted RBP6.47□□□□□ -1.37
USP4-213ENST00000488520 RAB2AP61019 212 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 CD300CQ08708 224 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 GCSAMLQ5JQS6 135 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 FAM90A2PQ658T7 463 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 ZNF414Q96IQ9 312 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 LINC00052Q96N35 136 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 PAXXQ9BUH6 204 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 SRD5A3Q9H8P0 318 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 SEPSECSQ9HD40 501 aaKnown RBP6.47□□□□□ -1.37
USP4-213ENST00000488520 CLEC5AQ9NY25 188 aa6.47□□□□□ -1.37
USP4-213ENST00000488520 CXorf65A6NEN9 183 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 HIST1H1EP10412 219 aaKnown RBP6.46□□□□□ -1.38
USP4-213ENST00000488520 RAB5CP51148 216 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 NKX2-5P52952 324 aaPredicted RBP6.46□□□□□ -1.38
USP4-213ENST00000488520 PSG9Q00887 426 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 MIR17HGQ75NE6 70 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 IQCF2Q8IXL9 164 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 C9orf62Q8N4C0 152 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 RPP25LQ8N5L8 163 aaKnown RBP6.46□□□□□ -1.38
USP4-213ENST00000488520 BLNKQ8WV28 456 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 KRTAP4-5Q9BYR2 181 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 SH3BGRL3Q9H299 93 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 TMEM14CQ9P0S9 112 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 RFNGQ9Y644 331 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 PCLOQ9Y6V0 5065 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 DNAH10Q8IVF4 4471 aa6.46□□□□□ -1.38
USP4-213ENST00000488520 HECTD4Q9Y4D8 3996 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 ISLRO14498 428 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 CXorf1O96002 111 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 NBEAP1P0C6P0 100 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 FAM74A1Q5RGS3 127 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 EBLN2Q6P2I7 272 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 LCN15Q6UWW0 184 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 DPPA3Q6W0C5 159 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 PQLC2Q6ZP29 291 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 TMED6Q8WW62 240 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 RAB24Q969Q5 203 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 SLC50A1Q9BRV3 221 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 HRH4Q9H3N8 390 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 AAMDCQ9H7C9 122 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 RPRMQ9NS64 109 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 PPP1R14DQ9NXH3 145 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 UBQLN2Q9UHD9 624 aa6.45□□□□□ -1.38
USP4-213ENST00000488520 CTXND1A0A1B0GTU2 59 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 K7EQG2 157 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 HMGB3O15347 200 aaKnown RBP6.44□□□□□ -1.38
USP4-213ENST00000488520 SNRPCP09234 159 aaKnown RBP6.44□□□□□ -1.38
USP4-213ENST00000488520 ZNF688P0C7X2 276 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 CSN1S1P47710 185 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 PSMB3P49720 205 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 DEFB131AP59861 70 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 PSMG4Q5JS54 123 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 SPATA31B1PQ5VZV4 182 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 STHQ8IWL8 128 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 FAM213BQ8TBF2 198 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 SLC25A2Q9BXI2 301 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 TMEM167BQ9NRX6 74 aa6.44□□□□□ -1.38
USP4-213ENST00000488520 HERC2O95714 4834 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 A0A087X0K7 114 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 A0A0J9YWU9 116 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 OR10J4P0C629 311 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 STAG3L2P0CL84 134 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 STAG3L3P0CL85 134 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 PYYP10082 97 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 NUTF2P61970 127 aaKnown RBP6.43□□□□□ -1.38
USP4-213ENST00000488520 RANP62826 216 aaKnown RBP6.43□□□□□ -1.38
USP4-213ENST00000488520 UBE2L3P68036 154 aaKnown RBP6.43□□□□□ -1.38
USP4-213ENST00000488520 BLOC1S1P78537 153 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 PDE6HQ13956 83 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 PSG3Q16557 428 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 MORN5Q5VZ52 161 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 LYPD1Q8N2G4 141 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 ZNF738Q8NE65 137 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 CMTM2Q8TAZ6 248 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 DCANP1Q8TF63 244 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 SFT2D1Q8WV19 159 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 PHYHIPLQ96FC7 376 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 OVOL2Q9BRP0 275 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 TMPRSS5Q9H3S3 457 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 PRELID1Q9Y255 219 aa6.43□□□□□ -1.38
USP4-213ENST00000488520 TRBV19A0A075B6N1 114 aa6.42□□□□□ -1.38
USP4-213ENST00000488520 PGPA6NDG6 321 aa6.42□□□□□ -1.38
USP4-213ENST00000488520 NUPR2A6NF83 97 aa6.42□□□□□ -1.38
USP4-213ENST00000488520 H3BQ15 152 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms