RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 PLECQ15149 4684 aaKnown RBP9.94□□□□□ -0.82
SYNE1-226ENST00000488376 SMIM9A6NGZ8 99 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 IGLL5B9A064 214 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 OR10J4P0C629 311 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 HIST1H1EP10412 219 aaKnown RBP9.93□□□□□ -0.82
SYNE1-226ENST00000488376 AZU1P20160 251 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 GUK1Q16774 197 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 FAM222AQ5U5X8 452 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 RPP25LQ8N5L8 163 aaKnown RBP9.93□□□□□ -0.82
SYNE1-226ENST00000488376 C2CD4CQ8TF44 421 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 ZNF503Q96F45 646 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 TMEM208Q9BTX3 173 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 DNAH1Q9P2D7 4330 aa9.93□□□□□ -0.82
SYNE1-226ENST00000488376 HBE1P02100 147 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 AMBPP02760 352 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 CT45A10P0DMU9 189 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 ERCC8Q13216 396 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 RRN3P1Q2M238 152 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 FFAR4Q5NUL3 377 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 FXYD5Q96DB9 178 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 DKK2Q9UBU2 259 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 APLNQ9ULZ1 77 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 FUT9Q9Y231 359 aa9.92□□□□□ -0.82
SYNE1-226ENST00000488376 YTHDF2Q9Y5A9 579 aaKnown RBP9.92□□□□□ -0.82
SYNE1-226ENST00000488376 TRAV10A0A0B4J240 114 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 PLAC8L1A1L4L8 177 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 J3KRW8 73 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 ZNF253O75346 499 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 RGS21Q2M5E4 152 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 OR10J6PQ8NGY7 276 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 PHYHIPLQ96FC7 376 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 PPP1R14DQ9NXH3 145 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 TIMM9Q9Y5J7 89 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 HYDINQ4G0P3 5121 aa9.91□□□□□ -0.82
SYNE1-226ENST00000488376 DEFB131BA0A096LNP1 70 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 C11orf94C9JXX5 98 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 NPIPB6E9PJ23 425 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 C17orf112F2Z3M2 114 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 IFNA5P01569 189 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 SPART-AS1P0CW21 52 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 CDKN1BP46527 198 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 ICAM4Q14773 271 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 OXA1LQ15070 435 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 GFI1BQ5VTD9 330 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 SCGB1C1Q8TD33 95 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 PAXXQ9BUH6 204 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 MRPL32Q9BYC8 188 aaKnown RBP9.9□□□□□ -0.82
SYNE1-226ENST00000488376 OR51M1Q9H341 326 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 KCNIP2Q9NS61 270 aa9.9□□□□□ -0.82
SYNE1-226ENST00000488376 IGHV4-4A0A075B6R2 117 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 IGKV2-40A0A087WW87 121 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-226ENST00000488376 TMEM189A5PLL7 270 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 G3V3Q6 166 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 IGKV2D-40P01614 121 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-226ENST00000488376 GIPP09681 153 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-226ENST00000488376 NBEAP1P0C6P0 100 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 HTN1P15515 57 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 RAB2AP61019 212 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 PDE6HQ13956 83 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 FAM122CQ6P4D5 195 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 RNF141Q8WVD5 230 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 LINC01587Q99440 93 aa9.89□□□□□ -0.83
SYNE1-226ENST00000488376 RNF222A6NCQ9 220 aa9.88□□□□□ -0.83
SYNE1-226ENST00000488376 OR7C2O60412 319 aa9.88□□□□□ -0.83
SYNE1-226ENST00000488376 MRPL53Q96EL3 112 aaKnown RBP9.88□□□□□ -0.83
SYNE1-226ENST00000488376 AQP10Q96PS8 301 aa9.88□□□□□ -0.83
SYNE1-226ENST00000488376 VGLL1Q99990 258 aa9.88□□□□□ -0.83
SYNE1-226ENST00000488376 NIPSNAP3BQ9BS92 247 aa9.88□□□□□ -0.83
SYNE1-226ENST00000488376 AGPAT4-IT1Q9H0P7 198 aa9.88□□□□□ -0.83
SYNE1-226ENST00000488376 LGALS9CQ6DKI2 356 aa9.87□□□□□ -0.83
SYNE1-226ENST00000488376 Q6ZQT7 251 aa9.87□□□□□ -0.83
SYNE1-226ENST00000488376 HSD17B11Q8NBQ5 300 aa9.87□□□□□ -0.83
SYNE1-226ENST00000488376 SH3BGRL3Q9H299 93 aa9.87□□□□□ -0.83
SYNE1-226ENST00000488376 FXYD6-FXYD2A0A087WZ82 144 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 TRAV12-3A0A0B4J271 114 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 HMGB3O15347 200 aaKnown RBP9.86□□□□□ -0.83
SYNE1-226ENST00000488376 HTN3P15516 51 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 TAS2R60P59551 318 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 RANP62826 216 aaKnown RBP9.86□□□□□ -0.83
SYNE1-226ENST00000488376 UBE2L3P68036 154 aaKnown RBP9.86□□□□□ -0.83
SYNE1-226ENST00000488376 CD300CQ08708 224 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 PRR9Q5T870 116 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 OR2T35Q8NGX2 323 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 FAM19A4Q96LR4 140 aa9.86□□□□□ -0.83
SYNE1-226ENST00000488376 SMLR1H3BR10 107 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 M6PRP20645 277 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 ATP6V0CP27449 155 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 TSPOP30536 169 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 LEPP41159 167 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 DAD1P61803 113 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 BTN1A1Q13410 526 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 TMEM256Q8N2U0 113 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 Q8TAT8 98 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 RNASE8Q8TDE3 154 aaKnown RBP9.85□□□□□ -0.83
SYNE1-226ENST00000488376 ODF3Q96PU9 254 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 Q9H3A6 140 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 AAMDCQ9H7C9 122 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 TNFSF18Q9UNG2 199 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 PRELID1Q9Y255 219 aa9.85□□□□□ -0.83
SYNE1-226ENST00000488376 H7BYZ3 331 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms