RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PRSS3P2Q8NHM4 247 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 LOC389332A0A1B0GUA5 103 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 RELQ04864 619 aaPredicted RBP14.01□□□□□ -0.17
VIM-206ENST00000487938 CCDC144NLQ6NUI1 221 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 Q8N6K4 173 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 ZNF48Q96MX3 618 aaPredicted RBP14.01□□□□□ -0.17
VIM-206ENST00000487938 THYN1Q9P016 225 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 SMAD5-AS1Q9Y6J3 95 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 Q8TAT8 98 aa14□□□□□ -0.17
VIM-206ENST00000487938 TMEM191AQ9H0A3 160 aa14□□□□□ -0.17
VIM-206ENST00000487938 AP5S1Q9NUS5 200 aa14□□□□□ -0.17
VIM-206ENST00000487938 IGHV7-81A0A0B4J1V7 117 aa13.99□□□□□ -0.17
VIM-206ENST00000487938 PSG9Q00887 426 aa13.99□□□□□ -0.17
VIM-206ENST00000487938 IFI27P40305 119 aaPredicted RBP13.99□□□□□ -0.17
VIM-206ENST00000487938 GATD1Q8NB37 220 aa13.99□□□□□ -0.17
VIM-206ENST00000487938 VGLL1Q99990 258 aa13.99□□□□□ -0.17
VIM-206ENST00000487938 ST20Q9HBF5 79 aa13.99□□□□□ -0.17
VIM-206ENST00000487938 HSPB8Q9UJY1 196 aa13.99□□□□□ -0.17
VIM-206ENST00000487938 A0A1B0GW15 77 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 A0A1W2PPR1 153 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 D6R8Y8 96 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 RPL7P18124 248 aaKnown RBP13.98□□□□□ -0.17
VIM-206ENST00000487938 PET117Q6UWS5 81 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 FA2HQ7L5A8 372 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 AMN1Q8IY45 258 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 TMEM190Q8WZ59 177 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 RABAC1Q9UI14 185 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 COL6A6A6NMZ7 2263 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 TCF21O43680 179 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 PRR25Q96S07 402 aa13.98□□□□□ -0.17
VIM-206ENST00000487938 ZNF80P51504 273 aaPredicted RBP13.97□□□□□ -0.17
VIM-206ENST00000487938 LOXL1Q08397 574 aaPredicted RBP13.97□□□□□ -0.17
VIM-206ENST00000487938 Q6AWC8 147 aa13.97□□□□□ -0.17
VIM-206ENST00000487938 C1orf122Q6ZSJ8 110 aa13.97□□□□□ -0.17
VIM-206ENST00000487938 HSBP1L1C9JCN9 74 aa13.97□□□□□ -0.17
VIM-206ENST00000487938 IGHG4P01861 327 aa13.97□□□□□ -0.17
VIM-206ENST00000487938 EBI3Q14213 229 aa13.97□□□□□ -0.17
VIM-206ENST00000487938 ZNF493Q6ZR52 646 aa13.97□□□□□ -0.17
VIM-206ENST00000487938 Q8N9W7 124 aa13.97□□□□□ -0.17
VIM-206ENST00000487938 NCR2O95944 276 aa13.96□□□□□ -0.17
VIM-206ENST00000487938 FXYD7P58549 80 aa13.96□□□□□ -0.17
VIM-206ENST00000487938 ZNF747Q9BV97 191 aa13.96□□□□□ -0.17
VIM-206ENST00000487938 GPR183P32249 361 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 ECSCRQ19T08 205 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 MPV17L2Q567V2 206 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 MINOS1Q5TGZ0 78 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 MINOS1-NBL1R4GNA1 71 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 SAPCD1Q5SSQ6 148 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 FAM104BQ5XKR9 115 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 SIRPDQ9H106 197 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 SIGLEC8Q9NYZ4 499 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 ZFHX3Q15911 3703 aa13.95□□□□□ -0.18
VIM-206ENST00000487938 OOSP1A8MZH6 123 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 C15orf32Q32M92 178 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 SLC25A34Q6PIV7 304 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 OR10AG1Q8NH19 301 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 PRELID3AQ96N28 172 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 IGHV3-66A0A0C4DH42 116 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 SMKR1H3BMG3 65 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 ERCC8Q13216 396 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 LINC01545Q5VT33 79 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 ORAOV1Q8WV07 137 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 SCRT2Q9NQ03 307 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 COX11Q9Y6N1 276 aa13.94□□□□□ -0.18
VIM-206ENST00000487938 CLEC3BP05452 202 aa13.93□□□□□ -0.18
VIM-206ENST00000487938 TWIST1Q15672 202 aa13.93□□□□□ -0.18
VIM-206ENST00000487938 MRPL51Q4U2R6 128 aaKnown RBP13.93□□□□□ -0.18
VIM-206ENST00000487938 DTX2Q86UW9 622 aa13.93□□□□□ -0.18
VIM-206ENST00000487938 SPTBN1Q01082 2364 aaKnown RBP13.93□□□□□ -0.18
VIM-206ENST00000487938 LINC01548A6NM66 108 aa13.93□□□□□ -0.18
VIM-206ENST00000487938 NUDT3O95989 172 aa13.93□□□□□ -0.18
VIM-206ENST00000487938 OR8A1Q8NGG7 326 aa13.93□□□□□ -0.18
VIM-206ENST00000487938 IGHV3OR16-13A0A075B7E8 117 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 A0A096LNJ9 63 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 IGHV3-74A0A0B4J1X5 117 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 PRAC2D3DTV9 90 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 CCL25O15444 150 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 RNF182Q8N6D2 247 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 U3KQK5 164 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 ATP6V0E1O15342 81 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 SCGB2A1O75556 95 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 PTTG1IPP53801 180 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 RHOGP84095 191 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 ERASQ7Z444 233 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 ZNF575Q86XF7 245 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 ORMDL3Q8N138 153 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 FER1L6-AS1Q8NA97 138 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 ZNF738Q8NE65 137 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 AJUBAQ96IF1 538 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 UBTD1Q9HAC8 227 aa13.92□□□□□ -0.18
VIM-206ENST00000487938 G3V318 75 aa13.91□□□□□ -0.18
VIM-206ENST00000487938 SNAI2O43623 268 aa13.91□□□□□ -0.18
VIM-206ENST00000487938 ORM1P02763 201 aa13.91□□□□□ -0.18
VIM-206ENST00000487938 CACNA1BQ00975 2339 aa13.91□□□□□ -0.18
VIM-206ENST00000487938 COX8CQ7Z4L0 72 aa13.91□□□□□ -0.18
VIM-206ENST00000487938 MSRB1Q9NZV6 116 aa13.91□□□□□ -0.18
VIM-206ENST00000487938 ZNF502Q8TBZ5 544 aa13.9□□□□□ -0.18
VIM-206ENST00000487938 CKS2P33552 79 aa13.9□□□□□ -0.18
VIM-206ENST00000487938 BMI1P35226 326 aa13.9□□□□□ -0.18
VIM-206ENST00000487938 SAA4P35542 130 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms