RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 GCHFRP30047 84 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 DEFB131AP59861 70 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 ZNF124Q15973 351 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 SSX7Q7RTT5 188 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 FAM24BQ8N5W8 94 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 SUN5Q8TC36 379 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 FXYD5Q96DB9 178 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 ZNF503Q96F45 646 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 SLC50A1Q9BRV3 221 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 TRBV19A0A075B6N1 114 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 A0A0J9YWU9 116 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 K7EQG2 157 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 HMGB3O15347 200 aaKnown RBP12.2□□□□□ -0.46
TRIM54-203ENST00000485306 PYYP10082 97 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 ID1P41134 155 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 PSMB3P49720 205 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 PPT1P50897 306 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 PSG9Q00887 426 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 DCANP1Q8TF63 244 aa12.2□□□□□ -0.46
TRIM54-203ENST00000485306 H3BQ15 152 aa12.19□□□□□ -0.46
TRIM54-203ENST00000485306 ISLRO14498 428 aa12.19□□□□□ -0.46
TRIM54-203ENST00000485306 OR10J4P0C629 311 aa12.19□□□□□ -0.46
TRIM54-203ENST00000485306 STHQ8IWL8 128 aa12.19□□□□□ -0.46
TRIM54-203ENST00000485306 LYPD1Q8N2G4 141 aa12.19□□□□□ -0.46
TRIM54-203ENST00000485306 C17orf77Q96MU5 243 aa12.19□□□□□ -0.46
TRIM54-203ENST00000485306 ZNF586Q9NXT0 402 aa12.19□□□□□ -0.46
TRIM54-203ENST00000485306 CXorf65A6NEN9 183 aa12.18□□□□□ -0.46
TRIM54-203ENST00000485306 SOCS3O14543 225 aa12.18□□□□□ -0.46
TRIM54-203ENST00000485306 EIF3GO75821 320 aaKnown RBP eCLIP12.18□□□□□ -0.46
TRIM54-203ENST00000485306 SNRPD3P62318 126 aaKnown RBP12.18□□□□□ -0.46
TRIM54-203ENST00000485306 PMS2P11Q13670 270 aa12.18□□□□□ -0.46
TRIM54-203ENST00000485306 C16orf92Q96LL3 132 aa12.18□□□□□ -0.46
TRIM54-203ENST00000485306 RARRES2Q99969 163 aa12.18□□□□□ -0.46
TRIM54-203ENST00000485306 ARL2-SNX15V9GYD0 113 aa12.18□□□□□ -0.46
TRIM54-203ENST00000485306 STARD9Q9P2P6 4700 aa12.18□□□□□ -0.46
TRIM54-203ENST00000485306 CA1P00915 261 aaPredicted RBP12.17□□□□□ -0.46
TRIM54-203ENST00000485306 FGF8P55075 233 aaPredicted RBP12.17□□□□□ -0.46
TRIM54-203ENST00000485306 RAB14P61106 215 aa12.17□□□□□ -0.46
TRIM54-203ENST00000485306 IQCF2Q8IXL9 164 aa12.17□□□□□ -0.46
TRIM54-203ENST00000485306 LYPD6BQ8NI32 183 aa12.17□□□□□ -0.46
TRIM54-203ENST00000485306 ZNF331Q9NQX6 463 aaPredicted RBP12.17□□□□□ -0.46
TRIM54-203ENST00000485306 PRELID1Q9Y255 219 aa12.17□□□□□ -0.46
TRIM54-203ENST00000485306 A0A1W2PRE2 83 aa12.16□□□□□ -0.46
TRIM54-203ENST00000485306 ZNF688P0C7X2 276 aa12.16□□□□□ -0.46
TRIM54-203ENST00000485306 IFITM2Q01629 132 aa12.16□□□□□ -0.46
TRIM54-203ENST00000485306 BLNKQ8WV28 456 aa12.16□□□□□ -0.46
TRIM54-203ENST00000485306 LYSTQ99698 3801 aa12.16□□□□□ -0.46
TRIM54-203ENST00000485306 NKX6-2Q9C056 277 aaPredicted RBP12.16□□□□□ -0.46
TRIM54-203ENST00000485306 AAMDCQ9H7C9 122 aa12.16□□□□□ -0.46
TRIM54-203ENST00000485306 NUPR2A6NF83 97 aa12.15□□□□□ -0.46
TRIM54-203ENST00000485306 NDUFB4O95168 129 aa12.15□□□□□ -0.46
TRIM54-203ENST00000485306 TAGLN2P37802 199 aaKnown RBP12.15□□□□□ -0.46
TRIM54-203ENST00000485306 ARL6IP6Q8N6S5 226 aa12.15□□□□□ -0.46
TRIM54-203ENST00000485306 OR11H2Q8NH07 326 aa12.15□□□□□ -0.46
TRIM54-203ENST00000485306 MRPL53Q96EL3 112 aaKnown RBP12.15□□□□□ -0.46
TRIM54-203ENST00000485306 OTORQ9NRC9 128 aa12.15□□□□□ -0.46
TRIM54-203ENST00000485306 DYNC2H1Q8NCM8 4307 aaKnown RBP12.15□□□□□ -0.46
TRIM54-203ENST00000485306 TRAV8-2A0A0B4J237 113 aa12.14□□□□□ -0.47
TRIM54-203ENST00000485306 SLC17A3O00476 420 aa12.14□□□□□ -0.47
TRIM54-203ENST00000485306 RGS13O14921 159 aa12.14□□□□□ -0.47
TRIM54-203ENST00000485306 IFNA1P01562 189 aa12.14□□□□□ -0.47
TRIM54-203ENST00000485306 NMBP08949 121 aa12.14□□□□□ -0.47
TRIM54-203ENST00000485306 MORN3Q6PF18 240 aaPredicted RBP12.14□□□□□ -0.47
TRIM54-203ENST00000485306 TMPRSS5Q9H3S3 457 aa12.14□□□□□ -0.47
TRIM54-203ENST00000485306 MANBALQ9NQG1 85 aa12.14□□□□□ -0.47
TRIM54-203ENST00000485306 H3BTX0 84 aa12.13□□□□□ -0.47
TRIM54-203ENST00000485306 SNRPCP09234 159 aaKnown RBP12.13□□□□□ -0.47
TRIM54-203ENST00000485306 RANP62826 216 aaKnown RBP12.13□□□□□ -0.47
TRIM54-203ENST00000485306 PSG3Q16557 428 aa12.13□□□□□ -0.47
TRIM54-203ENST00000485306 PSMG4Q5JS54 123 aa12.13□□□□□ -0.47
TRIM54-203ENST00000485306 RXFP4Q8TDU9 374 aa12.13□□□□□ -0.47
TRIM54-203ENST00000485306 TXNDC17Q9BRA2 123 aa12.13□□□□□ -0.47
TRIM54-203ENST00000485306 TCEAL7Q9BRU2 100 aa12.13□□□□□ -0.47
TRIM54-203ENST00000485306 Q9H3A6 140 aa12.13□□□□□ -0.47
TRIM54-203ENST00000485306 KLK5Q9Y337 293 aaPredicted RBP12.13□□□□□ -0.47
TRIM54-203ENST00000485306 A0A1B0GV50 99 aa12.12□□□□□ -0.47
TRIM54-203ENST00000485306 ACTL10Q5JWF8 245 aa12.12□□□□□ -0.47
TRIM54-203ENST00000485306 CLLU1Q5K131 121 aa12.12□□□□□ -0.47
TRIM54-203ENST00000485306 CEMP1Q6PRD7 247 aaPredicted RBP12.12□□□□□ -0.47
TRIM54-203ENST00000485306 TRPT1Q86TN4 253 aaKnown RBP12.12□□□□□ -0.47
TRIM54-203ENST00000485306 LINC00052Q96N35 136 aa12.12□□□□□ -0.47
TRIM54-203ENST00000485306 FAM74A7A6NL05 159 aa12.11□□□□□ -0.47
TRIM54-203ENST00000485306 KNCNA6PVL3 124 aa12.11□□□□□ -0.47
TRIM54-203ENST00000485306 CSN1S1P47710 185 aa12.11□□□□□ -0.47
TRIM54-203ENST00000485306 CCL20P78556 96 aa12.11□□□□□ -0.47
TRIM54-203ENST00000485306 AGRNO00468 2067 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 PGPA6NDG6 321 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 NUTF2P61970 127 aaKnown RBP12.1□□□□□ -0.47
TRIM54-203ENST00000485306 ICAM4Q14773 271 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 C5orf17Q8NAS9 161 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 ZNF738Q8NE65 137 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 C11orf45Q8TAV5 145 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 CMTM2Q8TAZ6 248 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 C11orf68Q9H3H3 251 aaKnown RBP12.1□□□□□ -0.47
TRIM54-203ENST00000485306 GNG13Q9P2W3 67 aa12.1□□□□□ -0.47
TRIM54-203ENST00000485306 SERTM2A0A1B0GWG4 89 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 PAGE4O60829 102 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 BCL2P10415 239 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 UBE2G2P60604 165 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms