RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 TXNDC17Q9BRA2 123 aa5.09□□□□□ -1.59
USP54-213ENST00000481991 SHANK2-AS3Q9BTD1 123 aa5.09□□□□□ -1.59
USP54-213ENST00000481991 KRTAP4-6Q9BYQ5 205 aa5.09□□□□□ -1.59
USP54-213ENST00000481991 SLC25A31Q9H0C2 315 aa5.09□□□□□ -1.59
USP54-213ENST00000481991 NAA60Q9H7X0 242 aa5.09□□□□□ -1.59
USP54-213ENST00000481991 KCNIP3Q9Y2W7 256 aa5.09□□□□□ -1.59
USP54-213ENST00000481991 RNF213Q63HN8 5207 aa5.09□□□□□ -1.6
USP54-213ENST00000481991 LINC00854A0A1B0GVQ3 168 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 H3BRN7 92 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 SPINK4O60575 86 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 RPS19P39019 145 aaKnown RBP5.08□□□□□ -1.6
USP54-213ENST00000481991 CCR6P51684 374 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 ATP5IP56385 69 aaPredicted RBP5.08□□□□□ -1.6
USP54-213ENST00000481991 KRTAP10-4P60372 401 aaPredicted RBP5.08□□□□□ -1.6
USP54-213ENST00000481991 RPP30P78346 268 aaKnown RBP5.08□□□□□ -1.6
USP54-213ENST00000481991 ERCC8Q13216 396 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 S100A7AQ86SG5 101 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 EIF4E3Q8N5X7 224 aaKnown RBP5.08□□□□□ -1.6
USP54-213ENST00000481991 THAP8Q8NA92 274 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 OR4D10Q8NGI6 311 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 ARPC5LQ9BPX5 153 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 ARL6Q9H0F7 186 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 HSPB7Q9UBY9 170 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 TP53TG3Q9ULZ0 132 aa5.08□□□□□ -1.6
USP54-213ENST00000481991 LRP1Q07954 4544 aaKnown RBP5.07□□□□□ -1.6
USP54-213ENST00000481991 C7orf71A4D174 169 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 WRBO00258 174 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 RAB3DO95716 219 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 ORM1P02763 201 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 SLC25A5P05141 298 aaKnown RBP5.07□□□□□ -1.6
USP54-213ENST00000481991 GPX1P07203 203 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 HNRNPA3P51991 378 aaKnown RBP5.07□□□□□ -1.6
USP54-213ENST00000481991 BTN1A1Q13410 526 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 SPANXN5Q5MJ07 72 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 CYP2G1PQ6ZSU1 146 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 LYZL2Q7Z4W2 148 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 LHFPL1Q86WI0 220 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 C11orf72Q8NBR9 251 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 TMEM37Q8WXS4 190 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 DAZAP1Q96EP5 407 aaKnown RBP5.07□□□□□ -1.6
USP54-213ENST00000481991 ZNF479Q96JC4 524 aa5.07□□□□□ -1.6
USP54-213ENST00000481991 RTBDNQ9BSG5 229 aaPredicted RBP5.07□□□□□ -1.6
USP54-213ENST00000481991 A0A087X0K7 114 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 LOC100131303A0A0U1RQF7 123 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 C9JCJ5 164 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 TMEM127O75204 238 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 MPDU1O75352 247 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 LINC00869P0C866 280 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 TCL1AP56279 114 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 CD300CQ08708 224 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 NEDD8Q15843 81 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 TDRG1Q3Y452 100 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 FAAP20Q6NZ36 180 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 TEPPQ6URK8 271 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 LCN15Q6UWW0 184 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 C9orf47Q6ZRZ4 202 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 OR52I2Q8NH67 350 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 DPH3Q96FX2 82 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 SLC50A1Q9BRV3 221 aa5.06□□□□□ -1.6
USP54-213ENST00000481991 ZNF331Q9NQX6 463 aaPredicted RBP5.06□□□□□ -1.6
USP54-213ENST00000481991 IGHV3-16A0A0C4DH30 117 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 DISC1C4P0D8 188 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 HPGDSO60760 199 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 MT1HL1P0DM35 61 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 ANXA2RQ3ZCQ2 193 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 LINC01556Q5JQF7 62 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 MORN5Q5VZ52 161 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 Q8N976 141 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 NRG4Q8WWG1 115 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 VGLL1Q99990 258 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 KRTAP9-2Q9BYQ4 174 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 ARV1Q9H2C2 271 aa5.05□□□□□ -1.6
USP54-213ENST00000481991 H3BP45 60 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 SLC17A3O00476 420 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 GOSR2O14653 212 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 MED6O75586 246 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 TAS2R19P59542 299 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 GABARAPL2P60520 117 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 RRAS2P62070 204 aaPredicted RBP5.04□□□□□ -1.6
USP54-213ENST00000481991 ASAH1Q13510 395 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 OPCMLQ14982 345 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 LINC00305Q7Z4B0 112 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 SH2D6Q7Z4S9 175 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 BPIFA4PQ86YQ2 179 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 TMEM229BQ8NBD8 167 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 OR4C5Q8NGB2 326 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 OR10P1Q8NGE3 313 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 RNF24Q9Y225 148 aa5.04□□□□□ -1.6
USP54-213ENST00000481991 IGHV1OR15-1A0A075B7D0 117 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 TRAV8-3A0A0A6YYJ7 113 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 A0A0B4J2A0 478 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 ANKRD65E5RJM6 399 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 APOA1P02647 267 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 OR4E1P0C645 316 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 ANXA3P12429 323 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 CXCL2P19875 107 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 TBPP20226 339 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 ZNF846Q147U1 533 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 ODF1Q14990 250 aa5.03□□□□□ -1.6
USP54-213ENST00000481991 MUC21Q5SSG8 566 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms