RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 IGLL5B9A064 214 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 F8W1H4 67 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 IL4P05112 153 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 ODF1Q14990 250 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 PLGLAQ15195 96 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 FOXI2Q6ZQN5 318 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 HHLA3Q9XRX5 114 aa14.8□□□□□ -0.04
CCDC88B-207ENST00000479965 IGKV2-40A0A087WW87 121 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 NPIPB5A8MRT5 1133 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 IGKV2D-40P01614 121 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 Q8TAT8 98 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 PHLDA1Q8WV24 401 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 CCL17Q92583 94 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 MAP1LC3AQ9H492 121 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 U3KQK5 164 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 TACC2O95359 2948 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 NDUFS8O00217 210 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 SCGB2A2Q13296 93 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 FBXL15Q9H469 300 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 AAMDCQ9H7C9 122 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 SMPXQ9UHP9 88 aa14.79□□□□□ -0.04
CCDC88B-207ENST00000479965 TRAV26-1A0A087WT03 109 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 TRAV40A0A0B4J280 105 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 TMEM8BA6NDV4 472 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 PAX8Q06710 450 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 AGRNO00468 2067 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 IGLV3-9A0A075B6K5 115 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 IGKV1-17P01599 117 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 IGHG3P01860 377 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 GATA1P15976 413 aaPredicted RBP14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 MC5RP33032 325 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 GAGE13Q4V321 117 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 LYPD2Q6UXB3 125 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 HIST1H4GQ99525 98 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 CSMD1Q96PZ7 3565 aa14.78□□□□□ -0.04
CCDC88B-207ENST00000479965 C16orf97H3BN30 126 aa14.77□□□□□ -0.04
CCDC88B-207ENST00000479965 FCN3O75636 299 aa14.77□□□□□ -0.04
CCDC88B-207ENST00000479965 DKK4Q9UBT3 224 aa14.77□□□□□ -0.04
CCDC88B-207ENST00000479965 A0A1B0GWB2 263 aa14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 FAM169BQ8N8A8 192 aa14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 FDCSPQ8NFU4 85 aa14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 E9PLD3 99 aa14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 ORM1P02763 201 aa14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 EGR2P11161 476 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 IGFL4Q6B9Z1 124 aa14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 SHANK2-AS3Q9BTD1 123 aa14.77□□□□□ -0.05
CCDC88B-207ENST00000479965 POLEQ07864 2286 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 SFTA2Q6UW10 78 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 SVIPQ8NHG7 77 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 TMEM158Q8WZ71 300 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 HIGD1BQ9P298 99 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 ADGRG4Q8IZF6 3080 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 CNIH1O95406 144 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 ZNF474Q6S9Z5 364 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 MAPKAPK5-AS1Q8N8E1 139 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 SIGLEC9Q9Y336 463 aa14.76□□□□□ -0.05
CCDC88B-207ENST00000479965 DPM2O94777 84 aa14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 C12orf74Q32Q52 190 aa14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 NDUFB3O43676 98 aa14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 SRSF6Q13247 344 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 C22orf34Q6ZV56 151 aa14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 PPP1R27Q86WC6 154 aa14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 C20orf78Q9BR46 151 aa14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 KLF17Q5JT82 389 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-207ENST00000479965 WNK2Q9Y3S1 2297 aa14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 TRBV6-1A0A0K0K1D8 114 aa14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 TEX36Q5VZQ5 186 aa14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 RNF125Q96EQ8 232 aa14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 SPATA25Q9BR10 227 aa14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 PRRG2O14669 202 aa14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 TM2D2Q9BX73 214 aa14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 MRPL35Q9NZE8 188 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-207ENST00000479965 MALRD1Q5VYJ5 2156 aa14.73□□□□□ -0.05
CCDC88B-207ENST00000479965 CRYBA4P53673 196 aa14.73□□□□□ -0.05
CCDC88B-207ENST00000479965 ARRDC1-AS1Q9H2J1 176 aa14.73□□□□□ -0.05
CCDC88B-207ENST00000479965 H3BRN7 92 aa14.73□□□□□ -0.05
CCDC88B-207ENST00000479965 NDUFA3O95167 84 aa14.73□□□□□ -0.05
CCDC88B-207ENST00000479965 TNFRSF6BO95407 300 aa14.73□□□□□ -0.05
CCDC88B-207ENST00000479965 TTC9CQ8N5M4 171 aa14.73□□□□□ -0.05
CCDC88B-207ENST00000479965 TEX22C9J3V5 150 aa14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 FAM27E3Q08E93 113 aa14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 I3L2K1 104 aa14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 APOMO95445 188 aa14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 ZNF80P51504 273 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 SEM1Q6ZVN7 128 aa14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 GEMIN7Q9H840 131 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 SH3BGRL2Q9UJC5 107 aa14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 ZNF491Q8N8L2 437 aa14.72□□□□□ -0.05
CCDC88B-207ENST00000479965 PCNX1Q96RV3 2341 aa14.71□□□□□ -0.06
CCDC88B-207ENST00000479965 K7EM74 188 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 LYPD1Q8N2G4 141 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 TNRC18O15417 2968 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 LAMA5O15230 3695 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 IGHV3OR16-8A0A075B7F1 116 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 COX7A1P24310 79 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 SYT8Q8NBV8 401 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 RNF185Q96GF1 192 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 PRR25Q96S07 402 aa14.7□□□□□ -0.06
CCDC88B-207ENST00000479965 IGHV1-8P0DP01 117 aa14.69□□□□□ -0.06
CCDC88B-207ENST00000479965 HLA-DMBP28068 263 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms