RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 FAM74A1Q5RGS3 127 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 Q6ZSA8 131 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 LINC00305Q7Z4B0 112 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 OR4B1Q8NGF8 309 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 PSMF1Q92530 271 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 SPANXCQ9NY87 97 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 ORMDL1Q9P0S3 153 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 TRAPPC2LQ9UL33 140 aa1.74□□□□□ -2.13
UPF3B-203ENST00000478840 RP1L1Q8IWN7 2480 aaPredicted RBP1.73□□□□□ -2.13
UPF3B-203ENST00000478840 TRBV27A0A0K0K1C4 114 aa1.73□□□□□ -2.13
UPF3B-203ENST00000478840 ARL5CA6NH57 179 aa1.73□□□□□ -2.13
UPF3B-203ENST00000478840 MT-ND6P03923 174 aa1.73□□□□□ -2.13
UPF3B-203ENST00000478840 ANGP03950 147 aaKnown RBP1.73□□□□□ -2.13
UPF3B-203ENST00000478840 CD2P06729 351 aa1.73□□□□□ -2.13
UPF3B-203ENST00000478840 ZNF431Q8TF32 576 aaPredicted RBP1.73□□□□□ -2.13
UPF3B-203ENST00000478840 LINC00526Q96FQ7 95 aa1.73□□□□□ -2.13
UPF3B-203ENST00000478840 TAS2R7Q9NYW3 318 aa1.73□□□□□ -2.13
UPF3B-203ENST00000478840 LOC107984640A0A0U1RRK4 108 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 A0A1B0GX51 115 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 NUPR1O60356 82 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 LYNX1P0DP58 116 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 SCGB1A1P11684 91 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 TMEM229BQ8NBD8 167 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 OR5H6Q8NGV6 325 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 PRELID3AQ96N28 172 aa1.72□□□□□ -2.13
UPF3B-203ENST00000478840 DIDO1Q9BTC0 2240 aaKnown RBP1.72□□□□□ -2.13
UPF3B-203ENST00000478840 MUC6Q6W4X9 2439 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 A2MP01023 1474 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 CECR2Q9BXF3 1484 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 MCM3APO60318 1980 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 TRAV13-1A0A0B4J241 112 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 J3KT08 172 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 FABP4P15090 132 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 SRP9P49458 86 aaKnown RBP1.71□□□□□ -2.14
UPF3B-203ENST00000478840 ALX1Q15699 326 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 VMA21Q3ZAQ7 101 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 OR10AG1Q8NH19 301 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 CBLN4Q9NTU7 201 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 TPRKBQ9Y3C4 175 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 MGAMO43451 1857 aa1.71□□□□□ -2.14
UPF3B-203ENST00000478840 XIRP1Q702N8 1843 aaKnown RBP1.7□□□□□ -2.14
UPF3B-203ENST00000478840 TRBV6-7A0A0A0MS04 114 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 C5orf67F2Z3F1 127 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 H3BMG7 143 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 COX7CP15954 63 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 CIRBPQ14011 172 aaKnown RBP1.7□□□□□ -2.14
UPF3B-203ENST00000478840 GDF5OSQ5U4N7 250 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 MORN4Q8NDC4 146 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 OR4C12Q96R67 309 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 ZFP30Q9Y2G7 519 aa1.7□□□□□ -2.14
UPF3B-203ENST00000478840 FER1L6Q2WGJ9 1857 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 FAM135BQ49AJ0 1406 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 TRAV36DV7A0A075B6V5 113 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 CCL25O15444 150 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 ARL14EPLP0DKL9 152 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 MAXP61244 160 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 LINC00269Q8N2A0 174 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 NAT14Q8WUY8 206 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 OBSCN-AS1Q96MR7 158 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 MRPL57Q9BQC6 102 aaKnown RBP1.69□□□□□ -2.14
UPF3B-203ENST00000478840 AIF1LQ9BQI0 150 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 JPT1Q9UK76 154 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 DLC1Q96QB1 1528 aa1.69□□□□□ -2.14
UPF3B-203ENST00000478840 TNRC6AQ8NDV7 1962 aaKnown RBP1.68□□□□□ -2.14
UPF3B-203ENST00000478840 OVOS2A0A0G2JMS6 1433 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 LOC105371267A0A1B0GV96 52 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 C9orf170A2RU37 121 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 F8W1H4 67 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 DEGS1O15121 323 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 OR8B8Q15620 311 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 TEN1Q86WV5 123 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 BORCS5Q969J3 196 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 NIT2Q9NQR4 276 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 BATF3Q9NR55 127 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 CACNA1BQ00975 2339 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 ALPK3Q96L96 1907 aa1.68□□□□□ -2.14
UPF3B-203ENST00000478840 FREM3P0C091 2139 aa1.67□□□□□ -2.14
UPF3B-203ENST00000478840 SAA1P0DJI8 122 aaPredicted RBP1.67□□□□□ -2.14
UPF3B-203ENST00000478840 RPL22P35268 128 aaKnown RBP1.67□□□□□ -2.14
UPF3B-203ENST00000478840 FOXA3P55318 350 aaPredicted RBP1.67□□□□□ -2.14
UPF3B-203ENST00000478840 FOXI2Q6ZQN5 318 aa1.67□□□□□ -2.14
UPF3B-203ENST00000478840 FAM19A2Q8N3H0 131 aa1.67□□□□□ -2.14
UPF3B-203ENST00000478840 TEX29Q8N6K0 151 aa1.67□□□□□ -2.14
UPF3B-203ENST00000478840 OR5A2Q8NGI9 324 aa1.67□□□□□ -2.14
UPF3B-203ENST00000478840 CST11Q9H112 138 aa1.67□□□□□ -2.14
UPF3B-203ENST00000478840 MED13Q9UHV7 2174 aa1.66□□□□□ -2.14
UPF3B-203ENST00000478840 SCTP09683 121 aa1.66□□□□□ -2.14
UPF3B-203ENST00000478840 TPT1P13693 172 aaKnown RBP1.66□□□□□ -2.14
UPF3B-203ENST00000478840 ZNF25P17030 456 aaPredicted RBP1.66□□□□□ -2.14
UPF3B-203ENST00000478840 CRYGSP22914 178 aa1.66□□□□□ -2.14
UPF3B-203ENST00000478840 Q5XG85 94 aa1.66□□□□□ -2.14
UPF3B-203ENST00000478840 LINC00322Q6ZN03 302 aaPredicted RBP1.66□□□□□ -2.14
UPF3B-203ENST00000478840 GKN2Q86XP6 184 aa1.66□□□□□ -2.14
UPF3B-203ENST00000478840 MED23Q9ULK4 1368 aa1.66□□□□□ -2.14
UPF3B-203ENST00000478840 SIP14410 1827 aa1.66□□□□□ -2.14
UPF3B-203ENST00000478840 PRRC2BQ5JSZ5 2229 aaKnown RBP1.65□□□□□ -2.15
UPF3B-203ENST00000478840 BORCS7-ASMTA0A0B4J1R7 106 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 H3BRM9 83 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 TRACP01848 142 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 GTF2A1P52655 376 aaPredicted RBP1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms