RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 STX12Q86Y82 276 aa1.35□□□□□ -2.19
VPS50-212ENST00000476413 PSMF1Q92530 271 aa1.35□□□□□ -2.19
VPS50-212ENST00000476413 NAT8BQ9UHF3 227 aa1.35□□□□□ -2.19
VPS50-212ENST00000476413 H3BRM9 83 aa1.34□□□□□ -2.19
VPS50-212ENST00000476413 HAGHLQ6PII5 290 aaPredicted RBP1.34□□□□□ -2.19
VPS50-212ENST00000476413 ZNF431Q8TF32 576 aaPredicted RBP1.34□□□□□ -2.19
VPS50-212ENST00000476413 ATPIF1Q9UII2 106 aa1.34□□□□□ -2.19
VPS50-212ENST00000476413 V9GYQ6 96 aa1.34□□□□□ -2.19
VPS50-212ENST00000476413 SNRNP200O75643 2136 aaKnown RBP1.34□□□□□ -2.2
VPS50-212ENST00000476413 TRAPPC8Q9Y2L5 1435 aa1.33□□□□□ -2.2
VPS50-212ENST00000476413 EFNA4P52798 201 aa1.33□□□□□ -2.2
VPS50-212ENST00000476413 Q8N6K4 173 aa1.33□□□□□ -2.2
VPS50-212ENST00000476413 PLPP5Q8NEB5 264 aa1.33□□□□□ -2.2
VPS50-212ENST00000476413 OR10AG1Q8NH19 301 aa1.33□□□□□ -2.2
VPS50-212ENST00000476413 CENPHQ9H3R5 247 aa1.33□□□□□ -2.2
VPS50-212ENST00000476413 GABARAPH6UMI1 98 aa1.32□□□□□ -2.2
VPS50-212ENST00000476413 PGRMC1O00264 195 aaKnown RBP1.32□□□□□ -2.2
VPS50-212ENST00000476413 KPNA4O00629 521 aaPredicted RBP1.32□□□□□ -2.2
VPS50-212ENST00000476413 NCR3O14931 201 aa1.32□□□□□ -2.2
VPS50-212ENST00000476413 LYRM1O43325 122 aa1.32□□□□□ -2.2
VPS50-212ENST00000476413 ANGPTL5Q86XS5 388 aa1.32□□□□□ -2.2
VPS50-212ENST00000476413 DIRC1Q969H9 104 aa1.32□□□□□ -2.2
VPS50-212ENST00000476413 RMND5BQ96G75 393 aaPredicted RBP1.32□□□□□ -2.2
VPS50-212ENST00000476413 TMEM138Q9NPI0 162 aa1.32□□□□□ -2.2
VPS50-212ENST00000476413 TNFSF18Q9UNG2 199 aa1.32□□□□□ -2.2
VPS50-212ENST00000476413 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.31□□□□□ -2.2
VPS50-212ENST00000476413 S100A11P31949 105 aa1.31□□□□□ -2.2
VPS50-212ENST00000476413 CROCCP2Q86T23 111 aa1.31□□□□□ -2.2
VPS50-212ENST00000476413 CCL4L1Q8NHW4 92 aa1.31□□□□□ -2.2
VPS50-212ENST00000476413 ISOC1Q96CN7 298 aa1.31□□□□□ -2.2
VPS50-212ENST00000476413 TET1Q8NFU7 2136 aa1.31□□□□□ -2.2
VPS50-212ENST00000476413 IGLV3-32A0A0A0MS00 114 aa1.3□□□□□ -2.2
VPS50-212ENST00000476413 BCL2P10415 239 aa1.3□□□□□ -2.2
VPS50-212ENST00000476413 MIR22HGQ0VDD5 57 aa1.3□□□□□ -2.2
VPS50-212ENST00000476413 FOXI2Q6ZQN5 318 aa1.3□□□□□ -2.2
VPS50-212ENST00000476413 LINC00269Q8N2A0 174 aa1.3□□□□□ -2.2
VPS50-212ENST00000476413 CITO14578 2027 aa1.3□□□□□ -2.2
VPS50-212ENST00000476413 A0A1B0GV72 72 aa1.29□□□□□ -2.2
VPS50-212ENST00000476413 MT-ND6P03923 174 aa1.29□□□□□ -2.2
VPS50-212ENST00000476413 FABP2P12104 132 aa1.29□□□□□ -2.2
VPS50-212ENST00000476413 CIRBPQ14011 172 aaKnown RBP1.29□□□□□ -2.2
VPS50-212ENST00000476413 HRCT1Q6UXD1 115 aa1.29□□□□□ -2.2
VPS50-212ENST00000476413 CCDC32Q9BV29 185 aa1.29□□□□□ -2.2
VPS50-212ENST00000476413 PTPRDP23468 1912 aa1.28□□□□□ -2.2
VPS50-212ENST00000476413 CNTRLQ7Z7A1 2325 aa1.28□□□□□ -2.2
VPS50-212ENST00000476413 PPYP01298 95 aa1.28□□□□□ -2.2
VPS50-212ENST00000476413 TFAMQ00059 246 aaKnown RBP1.28□□□□□ -2.2
VPS50-212ENST00000476413 THEM6Q8WUY1 208 aa1.28□□□□□ -2.2
VPS50-212ENST00000476413 NIT2Q9NQR4 276 aa1.28□□□□□ -2.2
VPS50-212ENST00000476413 LAMTOR2Q9Y2Q5 125 aa1.28□□□□□ -2.2
VPS50-212ENST00000476413 KIAA1107Q9UPP5 1409 aa1.28□□□□□ -2.2
VPS50-212ENST00000476413 FANCMQ8IYD8 2048 aa1.27□□□□□ -2.21
VPS50-212ENST00000476413 ZFC3H1O60293 1989 aaKnown RBP1.27□□□□□ -2.21
VPS50-212ENST00000476413 ERBINQ96RT1 1412 aa1.27□□□□□ -2.21
VPS50-212ENST00000476413 JMJD7-PLA2G4BH0Y9G9 81 aa1.27□□□□□ -2.21
VPS50-212ENST00000476413 ZCCHC23Q6ZST2 131 aa1.27□□□□□ -2.21
VPS50-212ENST00000476413 MCEEQ96PE7 176 aa1.27□□□□□ -2.21
VPS50-212ENST00000476413 WFDC10AQ9H1F0 79 aa1.27□□□□□ -2.21
VPS50-212ENST00000476413 E7EQ34 232 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 IFNA21P01568 189 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 FABP4P15090 132 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 POLR2HP52434 150 aaKnown RBP1.26□□□□□ -2.21
VPS50-212ENST00000476413 MRPS36P82909 103 aaKnown RBP1.26□□□□□ -2.21
VPS50-212ENST00000476413 GLIPR1L1Q6UWM5 242 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 OR4C12Q96R67 309 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 SELENOSQ9BQE4 189 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 EFCAB11Q9BUY7 163 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 CST11Q9H112 138 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 TCEAL2Q9H3H9 227 aaPredicted RBP1.26□□□□□ -2.21
VPS50-212ENST00000476413 TPRKBQ9Y3C4 175 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 MED31Q9Y3C7 131 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 TANC2Q9HCD6 1990 aa1.26□□□□□ -2.21
VPS50-212ENST00000476413 IGHV3-33P01772 117 aa1.25□□□□□ -2.21
VPS50-212ENST00000476413 RPL7P18124 248 aaKnown RBP1.25□□□□□ -2.21
VPS50-212ENST00000476413 SDC2P34741 201 aa1.25□□□□□ -2.21
VPS50-212ENST00000476413 B2MP61769 119 aa1.25□□□□□ -2.21
VPS50-212ENST00000476413 DIAPH2-AS1Q14236 149 aa1.25□□□□□ -2.21
VPS50-212ENST00000476413 DDA1Q9BW61 102 aa1.25□□□□□ -2.21
VPS50-212ENST00000476413 VMA21Q3ZAQ7 101 aa1.24□□□□□ -2.21
VPS50-212ENST00000476413 SBSPONQ8IVN8 264 aa1.24□□□□□ -2.21
VPS50-212ENST00000476413 FER1L6Q2WGJ9 1857 aa1.24□□□□□ -2.21
VPS50-212ENST00000476413 TCOF1Q13428 1488 aaKnown RBP1.24□□□□□ -2.21
VPS50-212ENST00000476413 FBN2P35556 2912 aa1.23□□□□□ -2.21
VPS50-212ENST00000476413 OR4B1Q8NGF8 309 aa1.23□□□□□ -2.21
VPS50-212ENST00000476413 OR5H6Q8NGV6 325 aa1.23□□□□□ -2.21
VPS50-212ENST00000476413 GRPEL2Q8TAA5 225 aa1.23□□□□□ -2.21
VPS50-212ENST00000476413 BCL9O00512 1426 aa1.23□□□□□ -2.21
VPS50-212ENST00000476413 A0A096LPI6 279 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 PFDN1O60925 122 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 IGLV3-1P01715 115 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 TMEM128Q5BJH2 165 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 TOMM20LQ6UXN7 152 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 LINC00305Q7Z4B0 112 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 PRELID3AQ96N28 172 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 USP54Q70EL1 1684 aa1.22□□□□□ -2.21
VPS50-212ENST00000476413 TRBV7-6A0A0J9YX20 115 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 TRBV27A0A0K0K1C4 114 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 RPS3P23396 243 aaKnown RBP eCLIP1.21□□□□□ -2.22
VPS50-212ENST00000476413 SPATA45Q537H7 98 aa1.21□□□□□ -2.22
VPS50-212ENST00000476413 SMIM15Q7Z3B0 74 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 399.8 ms