RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 SSNA1O43805 119 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 IGKV1-16P04430 117 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 SAA2P0DJI9 122 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-207ENST00000468384 IFI30P13284 250 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 ELK1P19419 428 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 MEOX2P50222 304 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 UBE2D1P51668 147 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 TAS2R19P59542 299 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 C4orf26Q17RF5 130 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 HIGD2BQ4VC39 106 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 HACD4Q5VWC8 232 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 TMEM42Q69YG0 159 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 GAPTQ8N292 157 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 OR4D11Q8NGI4 311 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 RHOXF1Q8NHV9 184 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 TYMSOSQ8TAI1 123 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 SPACA4Q8TDM5 124 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 TLCD1Q96CP7 247 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 PGLYRP3Q96LB9 341 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 POLR2J2Q9GZM3 115 aaKnown RBP2.77□□□□□ -1.97
HMGB1-207ENST00000468384 POLR2J3Q9H1A7 115 aaKnown RBP2.77□□□□□ -1.97
HMGB1-207ENST00000468384 SLC35B3Q9H1N7 401 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 NOP10Q9NPE3 64 aaKnown RBP2.77□□□□□ -1.97
HMGB1-207ENST00000468384 FIS1Q9Y3D6 152 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 ALG5Q9Y673 324 aa2.77□□□□□ -1.97
HMGB1-207ENST00000468384 TRAV14DV4A0A0A6YYC5 116 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 A0A0J9YXY3 114 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 DHRS12A0PJE2 317 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 TMEM14DPA8MWL7 114 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 HLA-DRB4P13762 266 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 PSMA1P25786 263 aaKnown RBP2.76□□□□□ -1.97
HMGB1-207ENST00000468384 PFN2P35080 140 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 IFNGR2P38484 337 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 CEACAM6P40199 344 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 REG3AQ06141 175 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 KIAA0087Q14695 138 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 NEGR1Q7Z3B1 354 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 FAM19A5Q7Z5A7 132 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-207ENST00000468384 GID4Q8IVV7 300 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 ATP6V0E2Q8NHE4 81 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 NEK7Q8TDX7 302 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 PRRT1Q99946 306 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 GID8Q9NWU2 228 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 TIMM8BQ9Y5J9 83 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-207ENST00000468384 HLA-DRB4X5D2U9 266 aa2.76□□□□□ -1.97
HMGB1-207ENST00000468384 EFCAB9A8MZ26 197 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 ORC5O43913 435 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 CYB5AP00167 134 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 CRHBPP24387 322 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 FGF8P55075 233 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-207ENST00000468384 GFI1BQ5VTD9 330 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 LINC00612Q8N6U2 182 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 DCANP1Q8TF63 244 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 IGF2BP2-AS1Q96M15 143 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 Q96MT0 163 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 SPIN2AQ99865 258 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 SPIN2BQ9BPZ2 258 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 SLIRPQ9GZT3 109 aaKnown RBP2.75□□□□□ -1.97
HMGB1-207ENST00000468384 MAP1LC3AQ9H492 121 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 SLC25A22Q9H936 323 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 CCL28Q9NRJ3 127 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 SPANXB1Q9NS25 103 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-207ENST00000468384 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.75□□□□□ -1.97
HMGB1-207ENST00000468384 MTFP1Q9UDX5 166 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 ANXA10Q9UJ72 324 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 DNAJC15Q9Y5T4 150 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 IER3IP1Q9Y5U9 82 aa2.75□□□□□ -1.97
HMGB1-207ENST00000468384 TRAV8-3A0A0A6YYJ7 113 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 TRAV8-1A0A0A6YYK1 113 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 A0A0B4J2A0 478 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 IGHV3-66A0A0C4DH42 116 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 PLIN3O60664 434 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 SLC22A5O76082 557 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 ZNF682O95780 498 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 IGHV3-30P01768 117 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 IGHV3-33P01772 117 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 GNAO1P09471 354 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 IGHV3-30-3P0DP02 117 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 IGHV3-30-5P0DP03 117 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 HIST1H1EP10412 219 aaKnown RBP2.74□□□□□ -1.97
HMGB1-207ENST00000468384 OMPP47874 163 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 TCL1AP56279 114 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 ARFRP1Q13795 201 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 SPA17Q15506 151 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 KLK9Q2XQG4 91 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 YIF1BQ5BJH7 314 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 PAGE3Q5JUK9 113 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 SYT6Q5T7P8 510 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-207ENST00000468384 CEND1Q8N111 149 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 PXT1Q8NFP0 134 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 OR10K1Q8NGX5 313 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 ZFAND1Q8TCF1 268 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 IL22RA2Q969J5 263 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 MAGOHBQ96A72 148 aaKnown RBP2.74□□□□□ -1.97
HMGB1-207ENST00000468384 FAM3DQ96BQ1 224 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 SPRR2FQ96RM1 72 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 NMNAT3Q96T66 252 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 HOPXQ9BPY8 73 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-207ENST00000468384 VSIRQ9H7M9 311 aa2.74□□□□□ -1.97
HMGB1-207ENST00000468384 TPT1P8Q9HAU6 139 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms