RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 INE1O15225 51 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 RPS3P23396 243 aaKnown RBP eCLIP1.28□□□□□ -2.2
VPS13A-209ENST00000467124 AKAP14Q86UN6 197 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 TAC4Q86UU9 113 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 TMEM35BQ8NCS4 154 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 PRELID3AQ96N28 172 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 TCEAL2Q9H3H9 227 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-209ENST00000467124 TPRKBQ9Y3C4 175 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 TNS3Q68CZ2 1445 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 UNC13CQ8NB66 2214 aa1.28□□□□□ -2.2
VPS13A-209ENST00000467124 UBR2Q8IWV8 1755 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 FRMPD1Q5SYB0 1578 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 RTL9Q8NET4 1388 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 M0R2N4 97 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 FABP4P15090 132 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 NDUFA6P56556 154 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 DIAPH2-AS1Q14236 149 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 OR4C12Q96R67 309 aa1.27□□□□□ -2.21
VPS13A-209ENST00000467124 MRPL57Q9BQC6 102 aaKnown RBP1.27□□□□□ -2.21
VPS13A-209ENST00000467124 NCAPD3P42695 1498 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 A0A087WSZ3 146 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 A0A096LPI6 279 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 NUPR1O60356 82 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 OR5AS1Q8N127 324 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 OR4B1Q8NGF8 309 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 ZNF431Q8TF32 576 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-209ENST00000467124 BRK1Q8WUW1 75 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 WFDC10AQ9H1F0 79 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 TNRC6AQ8NDV7 1962 aaKnown RBP1.26□□□□□ -2.21
VPS13A-209ENST00000467124 DLG5Q8TDM6 1919 aa1.26□□□□□ -2.21
VPS13A-209ENST00000467124 TRAPPC8Q9Y2L5 1435 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 ANKRD30AQ9BXX3 1397 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 TRAV23DV6A0A075B6W5 121 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 TRAV13-1A0A0B4J241 112 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 LOC107984156A0A0G2JMH3 177 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 PRORSD1PA6NEY8 169 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 H3BMG7 143 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 PPYP01298 95 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 COX7CP15954 63 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 MIR22HGQ0VDD5 57 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 KRTAP26-1Q6PEX3 210 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 LINC00322Q6ZN03 302 aaPredicted RBP1.25□□□□□ -2.21
VPS13A-209ENST00000467124 ZCCHC23Q6ZST2 131 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 ARL17AQ8IVW1 177 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 OR9Q1Q8NGQ5 310 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 CLEC2BQ92478 149 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 DIRC1Q969H9 104 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 LXNQ9BS40 222 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 GINS2Q9Y248 185 aa1.25□□□□□ -2.21
VPS13A-209ENST00000467124 KDM6AO15550 1401 aaPredicted RBP1.24□□□□□ -2.21
VPS13A-209ENST00000467124 LOC107984640A0A0U1RRK4 108 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 C3orf85A0A1B0GTC6 90 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 FAM107AO95990 144 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 NBEAP1P0C6P0 100 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 FOXA3P55318 350 aaPredicted RBP1.24□□□□□ -2.21
VPS13A-209ENST00000467124 MRPS36P82909 103 aaKnown RBP1.24□□□□□ -2.21
VPS13A-209ENST00000467124 PSG9Q00887 426 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 SKA2Q8WVK7 121 aaPredicted RBP1.24□□□□□ -2.21
VPS13A-209ENST00000467124 LIMD2Q9BT23 127 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 CBLN4Q9NTU7 201 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 CECR2Q9BXF3 1484 aa1.24□□□□□ -2.21
VPS13A-209ENST00000467124 BCL9O00512 1426 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 NUP210Q8TEM1 1887 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-209ENST00000467124 TPT1P13693 172 aaKnown RBP1.23□□□□□ -2.21
VPS13A-209ENST00000467124 CRYGSP22914 178 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 MAXP61244 160 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 TOMM20LQ6UXN7 152 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 FOXI2Q6ZQN5 318 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 LINC00526Q96FQ7 95 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 CST11Q9H112 138 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 TNFSF18Q9UNG2 199 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 MCM3APO60318 1980 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 CASP8AP2Q9UKL3 1982 aa1.23□□□□□ -2.21
VPS13A-209ENST00000467124 FREM3P0C091 2139 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 PLXNA4Q9HCM2 1894 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 KMT2BQ9UMN6 2715 aaPredicted RBP1.22□□□□□ -2.21
VPS13A-209ENST00000467124 KIAA1549Q9HCM3 1950 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 TRBV27A0A0K0K1C4 114 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 NEDD8Q15843 81 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 LINC00269Q8N2A0 174 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 TMEM229BQ8NBD8 167 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 OR5AK2Q8NH90 309 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 HSPB11Q9Y547 144 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 COL24A1Q17RW2 1714 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 ROS1P08922 2347 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 TRPM1Q7Z4N2 1603 aa1.22□□□□□ -2.21
VPS13A-209ENST00000467124 RFX7Q2KHR2 1363 aa1.21□□□□□ -2.21
VPS13A-209ENST00000467124 DLC1Q96QB1 1528 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 SNRNP200O75643 2136 aaKnown RBP1.21□□□□□ -2.22
VPS13A-209ENST00000467124 ADGBQ8N7X0 1667 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 JMJD7-PLA2G4BH0Y9G9 81 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 J3KT08 172 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 NCR3O14931 201 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 TRACP01848 142 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 SDC4P31431 198 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 HAGHLQ6PII5 290 aaPredicted RBP1.21□□□□□ -2.22
VPS13A-209ENST00000467124 OR10AG1Q8NH19 301 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 PSMF1Q92530 271 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 MCEEQ96PE7 176 aa1.21□□□□□ -2.22
VPS13A-209ENST00000467124 NABP2Q9BQ15 211 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms