RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 OR10J6PQ8NGY7 276 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 MRPL20Q9BYC9 149 aaKnown RBP6.19□□□□□ -1.42
USP54-210ENST00000466048 CLEC5AQ9NY25 188 aa6.19□□□□□ -1.42
USP54-210ENST00000466048 C9JQL5 133 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 GAGE5Q13069 117 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 GAGE6Q13070 117 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 PMVKQ15126 192 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 RPL39P5Q59GN2 51 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 SPRNQ5BIV9 151 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 TMEM170BQ5T4T1 132 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 DUX5Q96PT3 197 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 ERG28Q9UKR5 140 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 FOXA2Q9Y261 457 aaPredicted RBP6.18□□□□□ -1.42
USP54-210ENST00000466048 LINC00473A8K010 186 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 PRSS8Q16651 343 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 EBLN2Q6P2I7 272 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 C22orf34Q6ZV56 151 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 LINC00305Q7Z4B0 112 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 A0A087X0K7 114 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 TCRBV4S1A1TA0A5B7 111 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 FAM231BA6NCW3 169 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 TIMM23O14925 209 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 PRB3Q04118 309 aaPredicted RBP6.18□□□□□ -1.42
USP54-210ENST00000466048 VKORC1L1Q8N0U8 176 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 RPP25LQ8N5L8 163 aaKnown RBP6.18□□□□□ -1.42
USP54-210ENST00000466048 EPDR1Q9UM22 224 aa6.18□□□□□ -1.42
USP54-210ENST00000466048 TSSC4Q9Y5U2 329 aaPredicted RBP6.18□□□□□ -1.42
USP54-210ENST00000466048 CHD3Q12873 2000 aaKnown RBP6.18□□□□□ -1.42
USP54-210ENST00000466048 C15orf61A6NNL5 157 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 CRXO43186 299 aaPredicted RBP6.17□□□□□ -1.42
USP54-210ENST00000466048 PLNP26678 52 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 FCGR2BP31994 310 aaPredicted RBP6.17□□□□□ -1.42
USP54-210ENST00000466048 SRSF1Q07955 248 aaKnown RBP eCLIP6.17□□□□□ -1.42
USP54-210ENST00000466048 CFAP161Q6P656 301 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 ZNF833PQ6ZTB9 187 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 NPIPB3Q92617 1050 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 USMG5Q96IX5 58 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 FBXL15Q9H469 300 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 GAGE12JA6NER3 117 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 BUB1B-PAK6H3BSN5 160 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 H3BUX3 64 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 SIVA1O15304 175 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 GAGE7O76087 117 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 GAGE12FP0CL80 117 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 GAGE12GP0CL81 117 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 GAGE12IP0CL82 117 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 NPPCP23582 126 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 GAGE4Q13068 117 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 LHFPL4Q7Z7J7 247 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 BOD1L2Q8IYS8 172 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 MCRIP2Q9BUT9 160 aaKnown RBP6.17□□□□□ -1.42
USP54-210ENST00000466048 H7C1H1 209 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 IGHV4-39P01824 125 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 IGFBP2P18065 325 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 LEPP41159 167 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 BRD3OSQ6XYD6 125 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 MIR17HGQ75NE6 70 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 WNK2Q9Y3S1 2297 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 TLN1Q9Y490 2541 aaKnown RBP6.17□□□□□ -1.42
USP54-210ENST00000466048 UPK2O00526 184 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 TMEM95Q3KNT9 176 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 DDB2Q92466 427 aa6.17□□□□□ -1.42
USP54-210ENST00000466048 ANKRD11Q6UB99 2663 aaPredicted RBP6.16□□□□□ -1.42
USP54-210ENST00000466048 CADP27708 2225 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 IGHV1-3A0A0C4DH29 117 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 FNDC10F2Z333 226 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 TAL2Q16559 108 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 LCN12Q6JVE5 192 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 FBXL7Q9UJT9 491 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 PIEZO2Q9H5I5 2752 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 F2Z2F3 143 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 AZU1P20160 251 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 C9orf153Q5TBE3 101 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 WFDC3Q8IUB2 231 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 C11orf44Q8N8P7 122 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 ASCL2Q99929 193 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 C21orf62Q9NYP8 219 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 IGHV3-21A0A0B4J1V1 117 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 SAA4P35542 130 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 TMEM86BQ8N661 226 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 CCDC168Q8NDH2 2452 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 TRAV8-1A0A0A6YYK1 113 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 TRAV2A0A0B4J234 112 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 TRAV41A0A0B4J266 112 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 hDV102S1A0JD36 115 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 ZNF815PA8K554 130 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 SNRPD3P62318 126 aaKnown RBP6.16□□□□□ -1.42
USP54-210ENST00000466048 GCSAMLQ5JQS6 135 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 MEIG1Q5JSS6 88 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 STPG4Q8N801 248 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 SPAG8Q99932 426 aaPredicted RBP6.16□□□□□ -1.42
USP54-210ENST00000466048 GFRA4Q9GZZ7 299 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 DYSFO75923 2080 aa6.16□□□□□ -1.42
USP54-210ENST00000466048 IGHV1-24A0A0C4DH33 117 aa6.15□□□□□ -1.42
USP54-210ENST00000466048 TNFRSF13BO14836 293 aaPredicted RBP6.15□□□□□ -1.42
USP54-210ENST00000466048 COX8AP10176 69 aa6.15□□□□□ -1.42
USP54-210ENST00000466048 LOXP28300 417 aaPredicted RBP6.15□□□□□ -1.42
USP54-210ENST00000466048 ZNF134P52741 427 aa6.15□□□□□ -1.42
USP54-210ENST00000466048 NSUN5P1Q3KNT7 163 aa6.15□□□□□ -1.42
USP54-210ENST00000466048 PYGO2Q9BRQ0 406 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms