RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 PRR25Q96S07 402 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 EVI2AP22794 236 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 LCN12Q6JVE5 192 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 Q6ZVH6 145 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 MYO9AB2RTY4 2548 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 LOC107984156A0A0G2JMH3 177 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 C2orf70A6NJV1 201 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 F8VRH5 84 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 LINC01619G3V211 115 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 ARL17AQ8IVW1 177 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 VCYO14598 125 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 HTN1P15515 57 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 OR10W1Q8NGF6 305 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 TRGV11A0A075B6L2 103 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 ZNF134P52741 427 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 FAM110DQ8TAY7 271 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-216ENST00000461872 TMEM160Q9NX00 188 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 GATD1Q8NB37 220 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 VGLL1Q99990 258 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 NHP2Q9NX24 153 aaKnown RBP5.64□□□□□ -1.51
SYNE1-216ENST00000461872 DTX1Q86Y01 620 aa5.64□□□□□ -1.51
SYNE1-216ENST00000461872 TMSB15BA0A087X1C1 80 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 SH2D1AO60880 128 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 ADIPOQQ15848 244 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 ECSCRQ19T08 205 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 DEFB124Q8NES8 71 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 IFI27P40305 119 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-216ENST00000461872 RCHY1Q96PM5 261 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 CRIM1Q9NZV1 1036 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 METRNQ9UJH8 293 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 PTPRQQ9UMZ3 2332 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 RIPPLY3P57055 190 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 Q6ZPA2 131 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 MLST8Q9BVC4 326 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 TRAV5A0A0B4J249 113 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 TRAV8-6A0A0B4J262 113 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 ZNF815PA8K554 130 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 TNFRSF6BO95407 300 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 ZC2HC1BQ5TFG8 222 aa5.63□□□□□ -1.51
SYNE1-216ENST00000461872 PLA2G2CQ5R387 149 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 C5orf24Q7Z6I8 188 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 NPBQ8NG41 125 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 ZNF503-AS2A6NEH8 195 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 CCL25O15444 150 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 ZFAND6Q6FIF0 208 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 IL17RELQ6ZVW7 336 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 ARMS2P0C7Q2 107 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 RSPO4Q2I0M5 234 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-216ENST00000461872 CDPF1Q6NVV7 123 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 PRR14LQ5THK1 2151 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 MYCNOSP40205 109 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 CSTL1Q9H114 145 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 CCL3L1P16619 93 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 FNDC4Q9H6D8 234 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-216ENST00000461872 CMC4P56277 68 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-216ENST00000461872 SUMO2P61956 95 aaKnown RBP5.62□□□□□ -1.51
SYNE1-216ENST00000461872 SIGLEC15Q6ZMC9 328 aa5.62□□□□□ -1.51
SYNE1-216ENST00000461872 MOB4Q9Y3A3 225 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 A0A087X0K7 114 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 hDV102S1A0JD36 115 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 TIMM23O14925 209 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 SMIM2Q9BVW6 85 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 MGPP08493 103 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 RNF182Q8N6D2 247 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 TECTAO75443 2155 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 RHOHQ15669 191 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 PIMREGQ9BSJ6 248 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 CACNA1AO00555 2505 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 H3BMG7 143 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 LOXP28300 417 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-216ENST00000461872 SFTA2Q6UW10 78 aa5.61□□□□□ -1.51
SYNE1-216ENST00000461872 VMO1Q7Z5L0 202 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 EXOC3-AS1Q8N2X6 119 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 HLA-DMBP28068 263 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ATXN8Q156A1 80 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 U3KQK5 164 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ADAMTS20P59510 1910 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 RNF152Q8N8N0 203 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ST6GALNAC6Q969X2 333 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ABHD17AQ96GS6 310 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 A0A087WX48 190 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 H7C2G1 150 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 S100A7L2Q5SY68 101 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 TMEM8BA6NDV4 472 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 RHODO00212 210 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 WISP2O76076 250 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 INAFM2P0DMQ5 153 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 GATA3P23771 443 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 RPL32P62910 135 aaKnown RBP5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ANKRD39Q53RE8 183 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 EMP1P54849 157 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 KLRB1Q12918 225 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 C15orf32Q32M92 178 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 MRPL51Q4U2R6 128 aaKnown RBP5.6□□□□□ -1.51
SYNE1-216ENST00000461872 MORN3Q6PF18 240 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-216ENST00000461872 RAX2Q96IS3 184 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 CNFNQ9BYD5 112 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 HILPDAQ9Y5L2 63 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 NACAE9PAV3 2078 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 DSCR9P59020 149 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms