RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PRM2P04554 102 aa13.44□□□□□ -0.26
USP39-209ENST00000458268 HIST1H1EP10412 219 aaKnown RBP13.44□□□□□ -0.26
USP39-209ENST00000458268 EXOC3-AS1Q8N2X6 119 aa13.44□□□□□ -0.26
USP39-209ENST00000458268 TMEM14CQ9P0S9 112 aa13.44□□□□□ -0.26
USP39-209ENST00000458268 FUT9Q9Y231 359 aa13.44□□□□□ -0.26
USP39-209ENST00000458268 DYNC2H1Q8NCM8 4307 aaKnown RBP13.44□□□□□ -0.26
USP39-209ENST00000458268 FXYD6-FXYD2A0A087WZ82 144 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 SMIM9A6NGZ8 99 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 M0R3E3 92 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 RPP25LQ8N5L8 163 aaKnown RBP13.43□□□□□ -0.26
USP39-209ENST00000458268 C2CD4CQ8TF44 421 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 LINC01587Q99440 93 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 NEU1Q99519 415 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 PAXXQ9BUH6 204 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 MRPL32Q9BYC8 188 aaKnown RBP13.43□□□□□ -0.26
USP39-209ENST00000458268 OR51M1Q9H341 326 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 AAMDCQ9H7C9 122 aa13.43□□□□□ -0.26
USP39-209ENST00000458268 TMEM189A5PLL7 270 aa13.42□□□□□ -0.26
USP39-209ENST00000458268 CRXO43186 299 aaPredicted RBP13.42□□□□□ -0.26
USP39-209ENST00000458268 GIPP09681 153 aaPredicted RBP13.42□□□□□ -0.26
USP39-209ENST00000458268 Q5BKY6 102 aa13.42□□□□□ -0.26
USP39-209ENST00000458268 FAM122CQ6P4D5 195 aa13.42□□□□□ -0.26
USP39-209ENST00000458268 HSD17B11Q8NBQ5 300 aa13.42□□□□□ -0.26
USP39-209ENST00000458268 FAM167A-AS1Q96KT0 104 aa13.42□□□□□ -0.26
USP39-209ENST00000458268 YTHDF2Q9Y5A9 579 aaKnown RBP13.42□□□□□ -0.26
USP39-209ENST00000458268 TRAV10A0A0B4J240 114 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 NDUFB4O95168 129 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 SPART-AS1P0CW21 52 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 HTN3P15516 51 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 CDKN1BP46527 198 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 ERCC8Q13216 396 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 ICAM4Q14773 271 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 C12orf74Q32Q52 190 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 FAM222AQ5U5X8 452 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 LINC00476Q8WZB0 136 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 PLA2G2EQ9NZK7 142 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 RYR3Q15413 4870 aa13.41□□□□□ -0.26
USP39-209ENST00000458268 C11orf94C9JXX5 98 aa13.4□□□□□ -0.26
USP39-209ENST00000458268 NBEAP1P0C6P0 100 aa13.4□□□□□ -0.26
USP39-209ENST00000458268 UBE2L3P68036 154 aaKnown RBP13.4□□□□□ -0.26
USP39-209ENST00000458268 KIR3DS1Q14943 382 aa13.4□□□□□ -0.26
USP39-209ENST00000458268 RNF141Q8WVD5 230 aa13.4□□□□□ -0.26
USP39-209ENST00000458268 DEFB131BA0A096LNP1 70 aa13.39□□□□□ -0.27
USP39-209ENST00000458268 ZNF253O75346 499 aa13.39□□□□□ -0.27
USP39-209ENST00000458268 TSPOP30536 169 aa13.39□□□□□ -0.27
USP39-209ENST00000458268 RAB2AP61019 212 aa13.39□□□□□ -0.27
USP39-209ENST00000458268 OXA1LQ15070 435 aa13.39□□□□□ -0.27
USP39-209ENST00000458268 ACOT6Q3I5F7 207 aaPredicted RBP13.39□□□□□ -0.27
USP39-209ENST00000458268 INO80EQ8NBZ0 244 aaPredicted RBP13.39□□□□□ -0.27
USP39-209ENST00000458268 OR2T35Q8NGX2 323 aa13.39□□□□□ -0.27
USP39-209ENST00000458268 PHYHIPLQ96FC7 376 aa13.39□□□□□ -0.27
USP39-209ENST00000458268 IGKV2-40A0A087WW87 121 aaPredicted RBP13.38□□□□□ -0.27
USP39-209ENST00000458268 A0A1W2PPV4 95 aa13.38□□□□□ -0.27
USP39-209ENST00000458268 HMGB3O15347 200 aaKnown RBP13.38□□□□□ -0.27
USP39-209ENST00000458268 IGKV2D-40P01614 121 aaPredicted RBP13.38□□□□□ -0.27
USP39-209ENST00000458268 PDE6HQ13956 83 aa13.38□□□□□ -0.27
USP39-209ENST00000458268 KHDC3LQ587J8 217 aa13.38□□□□□ -0.27
USP39-209ENST00000458268 FXYD5Q96DB9 178 aa13.38□□□□□ -0.27
USP39-209ENST00000458268 LYSTQ99698 3801 aa13.38□□□□□ -0.27
USP39-209ENST00000458268 PRELID1Q9Y255 219 aa13.38□□□□□ -0.27
USP39-209ENST00000458268 NPIPB6E9PJ23 425 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 CT45A10P0DMU9 189 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 AZU1P20160 251 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 LEPP41159 167 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 TAS2R45P59539 299 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 RANP62826 216 aaKnown RBP13.37□□□□□ -0.27
USP39-209ENST00000458268 ZNF266Q14584 549 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 GFI1BQ5VTD9 330 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 AQP10Q96PS8 301 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 NIPSNAP3BQ9BS92 247 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 DKK2Q9UBU2 259 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 RPH3ALQ9UNE2 315 aa13.37□□□□□ -0.27
USP39-209ENST00000458268 TRAV12-3A0A0B4J271 114 aa13.36□□□□□ -0.27
USP39-209ENST00000458268 DAD1P61803 113 aa13.36□□□□□ -0.27
USP39-209ENST00000458268 OR10G4Q8NGN3 311 aa13.36□□□□□ -0.27
USP39-209ENST00000458268 OR10G9Q8NGN4 311 aa13.36□□□□□ -0.27
USP39-209ENST00000458268 OR10G7Q8NGN6 311 aa13.36□□□□□ -0.27
USP39-209ENST00000458268 MRPL53Q96EL3 112 aaKnown RBP13.36□□□□□ -0.27
USP39-209ENST00000458268 ALMS1Q8TCU4 4167 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 IGHV4-4A0A075B6R2 117 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 TEX48A0A1B0GUV7 120 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 SMLR1H3BR10 107 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 M6PRP20645 277 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 TMEM256Q8N2U0 113 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 ASB13Q8WXK3 278 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 ZNF503Q96F45 646 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 HYLS1Q96M11 299 aa13.35□□□□□ -0.27
USP39-209ENST00000458268 DEFB130BP0DP73 79 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 DEFB130AP0DP74 79 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 ATP6V0CP27449 155 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 CSN1S1P47710 185 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 TMEM78Q5T7P6 136 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 SH3BGRL3Q9H299 93 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 Q9H3A6 140 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 RYR2Q92736 4967 aa13.34□□□□□ -0.27
USP39-209ENST00000458268 H7BYZ3 331 aa13.33□□□□□ -0.28
USP39-209ENST00000458268 TAS2R60P59551 318 aa13.33□□□□□ -0.28
USP39-209ENST00000458268 RPL7L1Q6DKI1 246 aaKnown RBP13.33□□□□□ -0.28
USP39-209ENST00000458268 VGLL1Q99990 258 aa13.33□□□□□ -0.28
USP39-209ENST00000458268 AGPAT4-IT1Q9H0P7 198 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms