RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ARID1BQ8NFD5 2236 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 KNL1Q8NG31 2342 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 C2CD3Q4AC94 2353 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 ICE1Q9Y2F5 2266 aa3.73□□□□□ -1.81
CCDC88A-209ENST00000456975 E9PLD3 99 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 C11orf98E9PRG8 122 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 H3BP45 60 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 PTGDSP41222 190 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 CSN1S1P47710 185 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 RPS11P62280 158 aaKnown RBP eCLIP3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 LINC00596Q86U02 117 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 APCDD1LQ8NCL9 501 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 OR52N5Q8NH56 324 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 SLC25A38Q96DW6 304 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 URB1-AS1Q96HZ7 61 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 ZNF256Q9Y2P7 627 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 CREBBPQ92793 2442 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 DSPPQ9NZW4 1301 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 A6NIN4 97 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 NTN3O00634 580 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 ZNF324O75467 553 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 HLA-DMBP28068 263 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 CENPWQ5EE01 88 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 GUSBP11Q6P575 273 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 C2orf91Q6ZV80 131 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 BAGE3Q86Y29 109 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 BAGE2Q86Y30 109 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 BPIFA4PQ86YQ2 179 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 NMNAT3Q96T66 252 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 TM2D3Q9BRN9 247 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 FAM103A1Q9BTL3 118 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 RNF126Q9BV68 326 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 C11orf21Q9P2W6 132 aa3.72□□□□□ -1.81
CCDC88A-209ENST00000456975 TRBV19A0A075B6N1 114 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 SMIM26A0A096LP01 95 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 TRAV8-2A0A0B4J237 113 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 PRR32B1ATL7 298 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 H3BT86 120 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 J3QT63 122 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 K7N7A8 449 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 OR1I1O60431 355 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 TCL1BO95988 128 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 CD7P09564 240 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 RPL7L1Q6DKI1 246 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 PVRIGQ6DKI7 326 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 TMEM136Q6ZRR5 245 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 ZNF627Q7L945 461 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 ATP5L2Q7Z4Y8 100 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 WDR86Q86TI4 376 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 TEN1Q86WV5 123 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 C10orf105Q8TEF2 133 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 PATE1Q8WXA2 126 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 IMUPQ9GZP8 106 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 SLC39A9Q9NUM3 307 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 CSAG2Q9Y5P2 127 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 TRAV8-4A0A0B4J246 113 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 TRBV7-7A0A0K0K1E9 115 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 LGALS9O00182 355 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 SCRG1O75711 98 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 PPP1R3DO95685 299 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 HLA-DPB1P04440 258 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 COX6A1P12074 109 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 UBE2G1P62253 170 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 RPS18P62269 152 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 CYCSP99999 105 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 LGALS9BQ3B8N2 356 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 FAM120AOSQ5T036 256 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 CFAP126Q5VTH2 177 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 LINC00305Q7Z4B0 112 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 KRTAP1-3Q8IUG1 177 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 POM121L12Q8N7R1 296 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 OR10AC1Q8NH08 325 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 GEMIN6Q8WXD5 167 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 C17orf77Q96MU5 243 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 DPH3P1Q9H4G8 78 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 ANAPC10Q9UM13 185 aa3.71□□□□□ -1.82
CCDC88A-209ENST00000456975 IGHV4-28A0A0C4DH34 117 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 TRBV7-6A0A0J9YX20 115 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 ANGPTL7O43827 346 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 COX8AP10176 69 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 PTHLHP12272 177 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 TMEM187Q14656 261 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 ZNF324BQ6AW86 544 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 MSRB3Q8IXL7 192 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 CEND1Q8N111 149 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 KRTAP3-1Q9BYR8 98 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 C11orf68Q9H3H3 251 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 SPTBN1Q01082 2364 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 IGHV1OR21-1A0A087WYE8 117 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 A0A1W2PS18 150 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 FAM24AA6NFZ4 105 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 K7EM74 188 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 PRRG2O14669 202 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 ATP1B1P05026 303 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 ASAH2BP0C7U1 165 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 HLA-DRB4P13762 266 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 MPV17P39210 176 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 PROK1P58294 105 aa3.7□□□□□ -1.82
CCDC88A-209ENST00000456975 ERVK-16P61578 105 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms