RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 A0A096LPI6 279 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 BCL2P10415 239 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 G0S2P27469 103 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 FOXI2Q6ZQN5 318 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 LINC00299Q6ZSB3 139 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 OR4B1Q8NGF8 309 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 CCL4L1Q8NHW4 92 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 DYDC1Q8WWB3 177 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 DIRC1Q969H9 104 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 BORCS8Q96FH0 119 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 CCDC32Q9BV29 185 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 CST11Q9H112 138 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 WFDC10AQ9H1F0 79 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 SCN8AQ9UQD0 1980 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 FREM3P0C091 2139 aa0.52□□□□□ -2.33
USP40-209ENST00000452724 A0A0J9YY99 117 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 TRDV1A0A1B0GX56 115 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 A6NN06 94 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 C5orf67F2Z3F1 127 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 PPYP01298 95 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 NEFHP12036 1026 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 MIR22HGQ0VDD5 57 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 GLIPR1L1Q6UWM5 242 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 TRPM1Q7Z4N2 1603 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 ANGPTL5Q86XS5 388 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 LINC00269Q8N2A0 174 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.51□□□□□ -2.33
USP40-209ENST00000452724 EFCAB11Q9BUY7 163 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 PEAK1Q9H792 1746 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 SMPXQ9UHP9 88 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 TPRKBQ9Y3C4 175 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 V9GYQ6 96 aa0.51□□□□□ -2.33
USP40-209ENST00000452724 E9PCH4 1651 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 KIAA1107Q9UPP5 1409 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 TRAPPC8Q9Y2L5 1435 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 A0A1W2PRE2 83 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 C9orf170A2RU37 121 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 E7EQ34 232 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 FAM107AO95990 144 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 NDUFA6P56556 154 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 DIAPH2-AS1Q14236 149 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 ATOH7Q8N100 152 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 GRPEL2Q8TAA5 225 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 OR4C12Q96R67 309 aa0.5□□□□□ -2.33
USP40-209ENST00000452724 H7BYZ3 331 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 TRACP01848 142 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 MT-ND6P03923 174 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 FABP1P07148 127 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 FABP4P15090 132 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 SDC2P34741 201 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 TFAMQ00059 246 aaKnown RBP0.49□□□□□ -2.33
USP40-209ENST00000452724 VMA21Q3ZAQ7 101 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 STX12Q86Y82 276 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 BOKQ9UMX3 212 aaPredicted RBP0.49□□□□□ -2.33
USP40-209ENST00000452724 SYNMO15061 1565 aa0.49□□□□□ -2.33
USP40-209ENST00000452724 TRAV23DV6A0A075B6W5 121 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 TRBV27A0A0K0K1C4 114 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 A0A1B0GV72 72 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 IGHV3-30P01768 117 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 IGHV3-30-5P0DP03 117 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 FABP2P12104 132 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 TPT1P13693 172 aaKnown RBP0.48□□□□□ -2.33
USP40-209ENST00000452724 S100A11P31949 105 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 SRP9P49458 86 aaKnown RBP0.48□□□□□ -2.33
USP40-209ENST00000452724 FOXA3P55318 350 aaPredicted RBP0.48□□□□□ -2.33
USP40-209ENST00000452724 FXYD4P59646 89 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 CCSMST1Q4G0I0 132 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 SPINK9Q5DT21 86 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 TOMM20LQ6UXN7 152 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 OR9Q1Q8NGQ5 310 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 PRELID3AQ96N28 172 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 LXNQ9BS40 222 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 DDA1Q9BW61 102 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 MYH10P35580 1976 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 FRMPD1Q5SYB0 1578 aa0.48□□□□□ -2.33
USP40-209ENST00000452724 TECPR2O15040 1411 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 DOCK4Q8N1I0 1966 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 TRBV7-6A0A0J9YX20 115 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 C5orf58C9J3I9 102 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 GABARAPH6UMI1 98 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 K7EIL1 84 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 SAA1P0DJI8 122 aaPredicted RBP0.47□□□□□ -2.33
USP40-209ENST00000452724 PDE6GP18545 87 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 OCIAD2Q56VL3 154 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 SPATA8Q6RVD6 105 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 LINC00305Q7Z4B0 112 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 C10orf111Q8N326 155 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 OR5H6Q8NGV6 325 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 OR5AK2Q8NH90 309 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 THEM6Q8WUY1 208 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 TAF9BQ9HBM6 251 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 ERBINQ96RT1 1412 aa0.47□□□□□ -2.33
USP40-209ENST00000452724 UNC13CQ8NB66 2214 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 NUP98P52948 1817 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 TRBV30A0A0K0K1B3 111 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 ZNF727A8MUV8 499 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 H3BMG7 143 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 IFNA21P01568 189 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 CD14P08571 375 aa0.46□□□□□ -2.34
USP40-209ENST00000452724 POLR2HP52434 150 aaKnown RBP0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms