RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 IGLV2-18A0A075B6J9 118 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 TRAV12-2A0A075B6T6 113 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 LINC00854A0A1B0GVQ3 168 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 A0A1B0GVY2 172 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 C5orf51A6NDU8 294 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 SNURFLB1AK76 121 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 ZNF253O75346 499 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 MPDU1O75352 247 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 NUDT3O95989 172 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 MBPP02686 304 aaPredicted RBP4.99□□□□□ -1.61
VPS41-208ENST00000448833 IL7P13232 177 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 HTN1P15515 57 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 S100A11P31949 105 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 LEPP41159 167 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 CAMLGP49069 296 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 BCAP31P51572 246 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 SLC38A11Q08AI6 406 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 CLINT1Q14677 625 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 ATP6V1FQ16864 119 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 PATE2Q6UY27 113 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 STX12Q86Y82 276 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 BAP18Q8IXM2 172 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 ODF3Q96PU9 254 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 UQCC1Q9NVA1 299 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 FLVCR2Q9UPI3 526 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 PRELID1Q9Y255 219 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 PCLOQ9Y6V0 5065 aa4.99□□□□□ -1.61
VPS41-208ENST00000448833 HERC2O95714 4834 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 FAM25EA8MYX2 175 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 H3BNG1 76 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 MRPS12O15235 138 aaKnown RBP4.98□□□□□ -1.61
VPS41-208ENST00000448833 LYRM1O43325 122 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 RLN2P04090 185 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 TCRBP04435 133 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 AZU1P20160 251 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 BTF3P20290 206 aaKnown RBP4.98□□□□□ -1.61
VPS41-208ENST00000448833 RPL29P47914 159 aaKnown RBP4.98□□□□□ -1.61
VPS41-208ENST00000448833 CAV2P51636 162 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 TTC32Q5I0X7 151 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 LINC00299Q6ZSB3 139 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 NRARPQ7Z6K4 114 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 ZNF431Q8TF32 576 aaPredicted RBP4.98□□□□□ -1.61
VPS41-208ENST00000448833 MRPL53Q96EL3 112 aaKnown RBP4.98□□□□□ -1.61
VPS41-208ENST00000448833 C2orf50Q96LR7 162 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 PYGO2Q9BRQ0 406 aa4.98□□□□□ -1.61
VPS41-208ENST00000448833 RCL1Q9Y2P8 373 aaKnown RBP4.98□□□□□ -1.61
VPS41-208ENST00000448833 NBDYA0A0U1RRE5 68 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 PLAC8L1A1L4L8 177 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 RGS13O14921 159 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 SLC25A5P05141 298 aaKnown RBP4.97□□□□□ -1.61
VPS41-208ENST00000448833 NMBP08949 121 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 IGLC2P0DOY2 106 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 M6PRP20645 277 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 BTCP35070 178 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 SULT1A1P50225 295 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 PDE6HQ13956 83 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 C6orf223Q8N319 242 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 ZNF680Q8NEM1 530 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 RNASE8Q8TDE3 154 aaKnown RBP4.97□□□□□ -1.61
VPS41-208ENST00000448833 TMEM37Q8WXS4 190 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 GNPNAT1Q96EK6 184 aaPredicted RBP4.97□□□□□ -1.61
VPS41-208ENST00000448833 SAT2Q96F10 170 aaPredicted RBP4.97□□□□□ -1.61
VPS41-208ENST00000448833 LINC00477Q96M19 166 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 MGST2Q99735 147 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 CCDC32Q9BV29 185 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 AAMDCQ9H7C9 122 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 NOP10Q9NPE3 64 aaKnown RBP4.97□□□□□ -1.61
VPS41-208ENST00000448833 KCNIP2Q9NS61 270 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 WDR83OSQ9Y284 106 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 LSM5Q9Y4Y9 91 aaKnown RBP4.97□□□□□ -1.61
VPS41-208ENST00000448833 TIMM9Q9Y5J7 89 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 KIAA1109Q2LD37 5005 aa4.97□□□□□ -1.61
VPS41-208ENST00000448833 FAM240BA0A1B0GVZ2 78 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 CCNKO75909 580 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 CST7O76096 145 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 H2AFB2P0C5Z0 115 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 HIST1H1EP10412 219 aaKnown RBP4.96□□□□□ -1.62
VPS41-208ENST00000448833 BAXQ07812 192 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 ARL16Q0P5N6 197 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 DAZ2Q13117 558 aaKnown RBP4.96□□□□□ -1.62
VPS41-208ENST00000448833 OR5I1Q13606 314 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 OPCMLQ14982 345 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 FCN2Q15485 313 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 VWC2Q2TAL6 325 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 ZNRF2Q8NHG8 242 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 RXFP4Q8TDU9 374 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 SDHCQ99643 169 aaPredicted RBP4.96□□□□□ -1.62
VPS41-208ENST00000448833 GPN1Q9HCN4 374 aaPredicted RBP4.96□□□□□ -1.62
VPS41-208ENST00000448833 BATF3Q9NR55 127 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 LYRM2Q9NU23 88 aaPredicted RBP4.96□□□□□ -1.62
VPS41-208ENST00000448833 SLC39A9Q9NUM3 307 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 NUDT15Q9NV35 164 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 TMEM14CQ9P0S9 112 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 PKHD1P08F94 4074 aa4.96□□□□□ -1.62
VPS41-208ENST00000448833 TRBV19A0A075B6N1 114 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 TRAV6A0A075B6T7 132 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 TRAV26-1A0A087WT03 109 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 TRAV12-3A0A0B4J271 114 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 A0A1W2PPQ1 181 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 NPIPB6E9PJ23 425 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms