RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PYYP10082 97 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 C12orf74Q32Q52 190 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 MIR17HGQ75NE6 70 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 BAP18Q8IXM2 172 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 SLC25A2Q9BXI2 301 aa10.91□□□□□ -0.66
LIMS3-201ENST00000437679 MRPL32Q9BYC8 188 aaKnown RBP10.91□□□□□ -0.66
LIMS3-201ENST00000437679 TRAV12-2A0A075B6T6 113 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 TEX48A0A1B0GUV7 120 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 PRAC2D3DTV9 90 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 TCTAP57738 103 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 PDE6HQ13956 83 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 RGS21Q2M5E4 152 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 FFAR4Q5NUL3 377 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 ZNF767PQ75MW2 155 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 BLNKQ8WV28 456 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 MRPL53Q96EL3 112 aaKnown RBP10.9□□□□□ -0.66
LIMS3-201ENST00000437679 FUT9Q9Y231 359 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 PRELID1Q9Y255 219 aa10.9□□□□□ -0.66
LIMS3-201ENST00000437679 IGLL5B9A064 214 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 TSPOP30536 169 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 CDKN1BP46527 198 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 TMEM256Q8N2U0 113 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 ASB13Q8WXK3 278 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 FAM167A-AS1Q96KT0 104 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 PARD6GQ9BYG4 376 aaPredicted RBP10.89□□□□□ -0.67
LIMS3-201ENST00000437679 OR51M1Q9H341 326 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 AAMDCQ9H7C9 122 aa10.89□□□□□ -0.67
LIMS3-201ENST00000437679 DEFB131BA0A096LNP1 70 aa10.88□□□□□ -0.67
LIMS3-201ENST00000437679 ZNF705GA8MUZ8 300 aaPredicted RBP10.88□□□□□ -0.67
LIMS3-201ENST00000437679 NDUFB4O95168 129 aa10.88□□□□□ -0.67
LIMS3-201ENST00000437679 FAM222AQ5U5X8 452 aa10.88□□□□□ -0.67
LIMS3-201ENST00000437679 RPP25LQ8N5L8 163 aaKnown RBP10.88□□□□□ -0.67
LIMS3-201ENST00000437679 LINC01587Q99440 93 aa10.88□□□□□ -0.67
LIMS3-201ENST00000437679 PAXXQ9BUH6 204 aa10.88□□□□□ -0.67
LIMS3-201ENST00000437679 WFDC1Q9HC57 220 aa10.88□□□□□ -0.67
LIMS3-201ENST00000437679 DKK2Q9UBU2 259 aa10.88□□□□□ -0.67
LIMS3-201ENST00000437679 YTHDF2Q9Y5A9 579 aaKnown RBP10.88□□□□□ -0.67
LIMS3-201ENST00000437679 M0R3E3 92 aa10.87□□□□□ -0.67
LIMS3-201ENST00000437679 GIPP09681 153 aaPredicted RBP10.87□□□□□ -0.67
LIMS3-201ENST00000437679 NBEAP1P0C6P0 100 aa10.87□□□□□ -0.67
LIMS3-201ENST00000437679 NIPSNAP3BQ9BS92 247 aa10.87□□□□□ -0.67
LIMS3-201ENST00000437679 NPIPB6E9PJ23 425 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 OR7C2O60412 319 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 LEPP41159 167 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 TAS2R45P59539 299 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 TAS2R60P59551 318 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 ZNF266Q14584 549 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 LGALS9CQ6DKI2 356 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 EXOC3-AS1Q8N2X6 119 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 RNF141Q8WVD5 230 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 ODF3Q96PU9 254 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 C20orf144Q9BQM9 153 aa10.86□□□□□ -0.67
LIMS3-201ENST00000437679 OR10J4P0C629 311 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 CT45A10P0DMU9 189 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 HTN1P15515 57 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 ICAM4Q14773 271 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 ACOT6Q3I5F7 207 aaPredicted RBP10.85□□□□□ -0.67
LIMS3-201ENST00000437679 KHDC3LQ587J8 217 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 FXYD5Q96DB9 178 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 AQP10Q96PS8 301 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 APLNQ9ULZ1 77 aa10.85□□□□□ -0.67
LIMS3-201ENST00000437679 IGHV4-4A0A075B6R2 117 aa10.84□□□□□ -0.67
LIMS3-201ENST00000437679 H7BYZ3 331 aa10.84□□□□□ -0.67
LIMS3-201ENST00000437679 J3KRW8 73 aa10.84□□□□□ -0.67
LIMS3-201ENST00000437679 PRM2P04554 102 aa10.84□□□□□ -0.67
LIMS3-201ENST00000437679 DAD1P61803 113 aa10.84□□□□□ -0.67
LIMS3-201ENST00000437679 UBE2L3P68036 154 aaKnown RBP10.84□□□□□ -0.67
LIMS3-201ENST00000437679 OXA1LQ15070 435 aa10.84□□□□□ -0.67
LIMS3-201ENST00000437679 INO80EQ8NBZ0 244 aaPredicted RBP10.84□□□□□ -0.67
LIMS3-201ENST00000437679 LINC00477Q96M19 166 aa10.84□□□□□ -0.67
LIMS3-201ENST00000437679 A0A1W2PPV4 95 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 LYRM9A8MSI8 78 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 AZU1P20160 251 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 M6PRP20645 277 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 KIR3DS1Q14943 382 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 Q5BKY6 102 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 GFI1BQ5VTD9 330 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 FAM122CQ6P4D5 195 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 C16orf74Q96GX8 76 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 PLA2G2EQ9NZK7 142 aa10.83□□□□□ -0.68
LIMS3-201ENST00000437679 FXYD6-FXYD2A0A087WZ82 144 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 CSN1S1P47710 185 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 RANP62826 216 aaKnown RBP10.82□□□□□ -0.68
LIMS3-201ENST00000437679 ERCC8Q13216 396 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 ZNF493Q6ZR52 646 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 CCDC28AQ8IWP9 274 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 LYPD1Q8N2G4 141 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 HSD17B11Q8NBQ5 300 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 OR2T35Q8NGX2 323 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 ZNF503Q96F45 646 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 PHYHIPLQ96FC7 376 aa10.82□□□□□ -0.68
LIMS3-201ENST00000437679 HYDINQ4G0P3 5121 aa10.81□□□□□ -0.68
LIMS3-201ENST00000437679 IGKV2-40A0A087WW87 121 aaPredicted RBP10.81□□□□□ -0.68
LIMS3-201ENST00000437679 TRAV12-3A0A0B4J271 114 aa10.81□□□□□ -0.68
LIMS3-201ENST00000437679 IGKV2D-40P01614 121 aaPredicted RBP10.81□□□□□ -0.68
LIMS3-201ENST00000437679 SLC25A5P05141 298 aaKnown RBP10.81□□□□□ -0.68
LIMS3-201ENST00000437679 HTN3P15516 51 aa10.81□□□□□ -0.68
LIMS3-201ENST00000437679 RAB2AP61019 212 aa10.81□□□□□ -0.68
LIMS3-201ENST00000437679 TMEM78Q5T7P6 136 aa10.81□□□□□ -0.68
LIMS3-201ENST00000437679 C9orf47Q6ZRZ4 202 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms