RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 LINC00114Q6XXX2 140 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 DEFB104AQ8WTQ1 72 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 CLPSL1A2RUU4 121 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 NDUFA4O00483 81 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 Q6ZWC4 215 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 Q9HAA7 133 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 PKDREJQ9NTG1 2253 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 BUB3O43684 328 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 GBF1Q92538 1859 aa9.08□□□□□ -0.96
SCN4A-201ENST00000435607 IFITM3Q01628 133 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 GGNQ86UU5 652 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 LYZL4Q96KX0 146 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 SEC61GP60059 68 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 C1QL4Q86Z23 238 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 IGHG4P01861 327 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 FUSP35637 526 aaKnown RBP eCLIP9.07□□□□□ -0.96
SCN4A-201ENST00000435607 RPL18AQ02543 176 aaKnown RBP9.07□□□□□ -0.96
SCN4A-201ENST00000435607 KNCNA6PVL3 124 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 ATP6V0E1O15342 81 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 HERVK_113P63121 156 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 ID3Q02535 119 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 CD177Q8N6Q3 437 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 DYSFO75923 2080 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 C1QCP02747 245 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 UTF1Q5T230 341 aa9.07□□□□□ -0.96
SCN4A-201ENST00000435607 NXPH4O95158 308 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 TGFBR3LH3BV60 316 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 C9JAW5 83 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 HLA-DRB4P13762 266 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 TNCP24821 2201 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 GUSBP1Q15486 140 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 HLA-DRB4X5D2U9 266 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 PTPRFP10586 1907 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 MPV17L2Q567V2 206 aa9.06□□□□□ -0.96
SCN4A-201ENST00000435607 LHFPL4Q7Z7J7 247 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 TMEM75Q8N9X5 138 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 SHANK2-AS3Q9BTD1 123 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 TP53TG1Q9Y2A0 90 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 C15orf53Q8NAA6 179 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 CCL24O00175 119 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 GFRA4Q9GZZ7 299 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 LY96Q9Y6Y9 160 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 ARID2Q68CP9 1835 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 SPART-AS1P0CW21 52 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 CFHR2P36980 270 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 NBL1P41271 181 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 RPP25LQ8N5L8 163 aaKnown RBP9.05□□□□□ -0.96
SCN4A-201ENST00000435607 ATP6V0BQ99437 205 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 KLK9Q9UKQ9 250 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 COL24A1Q17RW2 1714 aa9.05□□□□□ -0.96
SCN4A-201ENST00000435607 AGMATQ9BSE5 352 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 NUP35Q8NFH5 326 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 ICOSQ9Y6W8 199 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 NCKAP5O14513 1909 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 TRBV20-1A0A075B6N2 111 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 TMEM242Q9NWH2 141 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 LY6HO94772 140 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 FOXG1P55316 489 aaPredicted RBP9.04□□□□□ -0.96
SCN4A-201ENST00000435607 YPEL3P61236 119 aaPredicted RBP9.04□□□□□ -0.96
SCN4A-201ENST00000435607 LYPD2Q6UXB3 125 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 H3BQ85 93 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 UBE2AP49459 152 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 DEFB105AQ8NG35 78 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 TMEM14BQ9NUH8 114 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 MRPL23Q16540 153 aaKnown RBP9.04□□□□□ -0.96
SCN4A-201ENST00000435607 TIMM17AQ99595 171 aa9.04□□□□□ -0.96
SCN4A-201ENST00000435607 MRPL36Q9P0J6 103 aaKnown RBP9.03□□□□□ -0.96
SCN4A-201ENST00000435607 GSN-AS1Q9NRJ2 163 aa9.03□□□□□ -0.96
SCN4A-201ENST00000435607 SIPA1L3O60292 1781 aaPredicted RBP9.03□□□□□ -0.96
SCN4A-201ENST00000435607 PAQR4Q8N4S7 273 aaPredicted RBP9.03□□□□□ -0.96
SCN4A-201ENST00000435607 ZC2HC1BQ5TFG8 222 aa9.03□□□□□ -0.96
SCN4A-201ENST00000435607 A0A096LPF7 62 aa9.03□□□□□ -0.96
SCN4A-201ENST00000435607 H3BUA1 57 aa9.03□□□□□ -0.96
SCN4A-201ENST00000435607 IGKV1-9A0A0C4DH69 117 aa9.02□□□□□ -0.96
SCN4A-201ENST00000435607 NMSQ5H8A3 153 aa9.02□□□□□ -0.96
SCN4A-201ENST00000435607 CFPP27918 469 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 FGFBP3Q8TAT2 258 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 MED12Q93074 2177 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 C9orf153Q5TBE3 101 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 VPREB3Q9UKI3 123 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 ZNF134P52741 427 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 KLF2Q9Y5W3 355 aaPredicted RBP9.02□□□□□ -0.97
SCN4A-201ENST00000435607 IGKV1-39P01597 117 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 IGKV1D-39P04432 117 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 C5orf63A6NC05 138 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 FGF16O43320 207 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 ZNF124Q15973 351 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 IGFL4Q6B9Z1 124 aa9.02□□□□□ -0.97
SCN4A-201ENST00000435607 CLPSL2Q6UWE3 100 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 AMN1Q8IY45 258 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 VWCEQ96DN2 955 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 EML6Q6ZMW3 1958 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 FANCD2OSQ96PS1 177 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 NBASA2RRP1 2371 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 CACNA1HO95180 2353 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 BRWD3Q6RI45 1802 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 TRBV6-6A0A0A6YYG2 114 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 C8orf86Q6ZUL3 223 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 PIFOQ8TCI5 191 aa9.01□□□□□ -0.97
SCN4A-201ENST00000435607 COL5A3P25940 1745 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms