RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 CLEC5AQ9NY25 188 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 MRPL27Q9P0M9 148 aaKnown RBP8.39□□□□□ -1.07
CUX1-205ENST00000425244 ABCA2Q9BZC7 2435 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 IGHV4-61A0A0C4DH41 118 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 A0A1B0GXF2 115 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 C19orf71A6NCJ1 209 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 PAX2Q02962 417 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 BCL6BQ8N143 479 aaPredicted RBP8.39□□□□□ -1.07
CUX1-205ENST00000425244 CFHR4Q92496 578 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 SHANK2-AS3Q9BTD1 123 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 PRSS22Q9GZN4 317 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 TMEM14CQ9P0S9 112 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 SH2D7A6NKC9 451 aaPredicted RBP8.39□□□□□ -1.07
CUX1-205ENST00000425244 HLA-DRB1P01911 266 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 Q56UQ5 140 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 RBPMS2Q6ZRY4 209 aaKnown RBP8.39□□□□□ -1.07
CUX1-205ENST00000425244 OR11H6Q8NGC7 330 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 TPPP3Q9BW30 176 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 CST9LQ9H4G1 147 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 ZNF492Q9P255 531 aa8.39□□□□□ -1.07
CUX1-205ENST00000425244 TEX15Q9BXT5 2789 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 TRBV19A0A075B6N1 114 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 M0R3E3 92 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 CHEK1O14757 476 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 IGLV2-11P01706 119 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 LMO4P61968 165 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 C5orf64Q2M2E5 130 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 ZNF491Q8N8L2 437 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 ZNF738Q8NE65 137 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 FAM181BA6NEQ2 426 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 OR2J3O76001 311 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 KLF5Q13887 457 aaPredicted RBP8.38□□□□□ -1.07
CUX1-205ENST00000425244 SRSF8Q9BRL6 282 aaKnown RBP8.38□□□□□ -1.07
CUX1-205ENST00000425244 COX11Q9Y6N1 276 aa8.38□□□□□ -1.07
CUX1-205ENST00000425244 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.38□□□□□ -1.073e-7■■■■■ 26.8
CUX1-205ENST00000425244 H3BRN7 92 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 PRTN3P24158 256 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 NDPQ00604 133 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 CT83Q5H943 113 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 VMO1Q7Z5L0 202 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 DYNAPQ8N1N2 210 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 C10orf105Q8TEF2 133 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 ARPC1AQ92747 370 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 ZC2HC1AQ96GY0 325 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 NOTCH2Q04721 2471 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 UNC79Q9P2D8 2635 aa8.37□□□□□ -1.07
CUX1-205ENST00000425244 IGHV3OR16-8A0A075B7F1 116 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 M0R1W7 72 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 IGLC2P0DOY2 106 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 RPS20P60866 119 aaKnown RBP8.36□□□□□ -1.07
CUX1-205ENST00000425244 EBLN2Q6P2I7 272 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 SIGLEC15Q6ZMC9 328 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 NPBQ8NG41 125 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 TIMM8BQ9Y5J9 83 aaPredicted RBP8.36□□□□□ -1.07
CUX1-205ENST00000425244 TLN2Q9Y4G6 2542 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 IGHV3OR16-10A0A075B7F0 116 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 TRAV30A0A087WSZ9 112 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 IGHV3-35A0A0C4DH35 117 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 ODF3BA8MYP8 253 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 K7EQM0 130 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 NDUFA3O95167 84 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 Q6ZN92 141 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 PSG8Q9UQ74 426 aa8.36□□□□□ -1.07
CUX1-205ENST00000425244 OR2T8A6NH00 312 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 ZNF138P52744 262 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 MFAP4P55083 255 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 Q6ZVH6 145 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 FANCD2OSQ96PS1 177 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 PSMG3-AS1Q96PY0 264 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 CSPG4Q6UVK1 2322 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 PRRC2AP48634 2157 aaKnown RBP8.35□□□□□ -1.07
CUX1-205ENST00000425244 TMSB15BA0A087X1C1 80 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 CSN3P07498 182 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 CTRLP40313 264 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 URB1-AS1Q96HZ7 61 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 ZNF414Q96IQ9 312 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 GFRA4Q9GZZ7 299 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 C21orf62Q9NYP8 219 aa8.35□□□□□ -1.07
CUX1-205ENST00000425244 SOX21Q9Y651 276 aaPredicted RBP8.35□□□□□ -1.07
CUX1-205ENST00000425244 IGLV11-55A0A075B6I3 123 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 CCDC144NLQ6NUI1 221 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 ZNF562Q6V9R5 426 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 UQCR10Q9UDW1 63 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 LOC102724200A0A096LPH7 203 aaPredicted RBP8.34□□□□□ -1.07
CUX1-205ENST00000425244 ZNF785A8K8V0 405 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 NPIPB6E9PJ23 425 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 K7ERU9 68 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 ARMS2P0C7Q2 107 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 RIPPLY3P57055 190 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 PSG3Q16557 428 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 UNQ5815/PRO19632Q6UWF5 114 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 TMEM75Q8N9X5 138 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 C8orf49Q96NF6 230 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 AAMDCQ9H7C9 122 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 CREBBPQ92793 2442 aa8.34□□□□□ -1.07
CUX1-205ENST00000425244 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.33□□□□□ -1.08
CUX1-205ENST00000425244 WI2-2373I1.2A0A1W2PRP0 233 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 IGLC3P0DOY3 106 aa8.33□□□□□ -1.08
CUX1-205ENST00000425244 HNRNPA3P51991 378 aaKnown RBP8.33□□□□□ -1.08
CUX1-205ENST00000425244 LINC00173Q6ZV60 143 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 632.4 ms