RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CT45A10P0DMU9 189 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 HOXA5P20719 270 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 CCL18P55774 89 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 FAM3BP58499 235 aaPredicted RBP8.05□□□□□ -1.12
USP4-204ENST00000416417 ERCC8Q13216 396 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 NRARPQ7Z6K4 114 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 OR10J6PQ8NGY7 276 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 TMEM263Q8WUH6 116 aaKnown RBP8.05□□□□□ -1.12
USP4-204ENST00000416417 SLC50A1Q9BRV3 221 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 KRTAP1-5Q9BYS1 174 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 C20orf85Q9H1P6 137 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 HSPG2P98160 4391 aa8.05□□□□□ -1.12
USP4-204ENST00000416417 IGLC2P0DOY2 106 aa8.04□□□□□ -1.12
USP4-204ENST00000416417 CXCL2P19875 107 aa8.04□□□□□ -1.12
USP4-204ENST00000416417 CAMLGP49069 296 aa8.04□□□□□ -1.12
USP4-204ENST00000416417 CAV2P51636 162 aa8.04□□□□□ -1.12
USP4-204ENST00000416417 PXDC1Q5TGL8 231 aa8.04□□□□□ -1.12
USP4-204ENST00000416417 ZNF493Q6ZR52 646 aa8.04□□□□□ -1.12
USP4-204ENST00000416417 S100A7AQ86SG5 101 aa8.04□□□□□ -1.12
USP4-204ENST00000416417 GNPNAT1Q96EK6 184 aaPredicted RBP8.04□□□□□ -1.12
USP4-204ENST00000416417 SAT2Q96F10 170 aaPredicted RBP8.04□□□□□ -1.12
USP4-204ENST00000416417 C5orf51A6NDU8 294 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 ZNF701M0R085 212 aaPredicted RBP8.03□□□□□ -1.12
USP4-204ENST00000416417 ZNF846Q147U1 533 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 CCDC28AQ8IWP9 274 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 GGACTQ9BVM4 153 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 C11orf1Q9H5F2 150 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 Q9H8V8 135 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 DNAJC4Q9NNZ3 241 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 ZNF586Q9NXT0 402 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 UBE2L5PA0A1B0GUS4 154 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 M0R3E3 92 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 S100A10P60903 97 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 ESRGQ1W209 222 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 Q6ZTI0 123 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 LINC00612Q8N6U2 182 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 ZNF431Q8TF32 576 aaPredicted RBP8.03□□□□□ -1.12
USP4-204ENST00000416417 TMPRSS5Q9H3S3 457 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 PXMP4Q9Y6I8 212 aa8.03□□□□□ -1.12
USP4-204ENST00000416417 MUC4Q99102 2169 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 LRP1BQ9NZR2 4599 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 IGSF23A1L1A6 192 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 SNURFLB1AK76 121 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 NPIPB6E9PJ23 425 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 LYRM1O43325 122 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 RLN2P04090 185 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 TCRBP04435 133 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 M6PRP20645 277 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 BAXQ07812 192 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 Q6ZRG5 221 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 RXFP4Q8TDU9 374 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 UQCC1Q9NVA1 299 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 WDR83OSQ9Y284 106 aa8.02□□□□□ -1.13
USP4-204ENST00000416417 PYYP10082 97 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 LEPP41159 167 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 CD300CQ08708 224 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 BTN1A1Q13410 526 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 GCSAMLQ5JQS6 135 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 Q6ZQT7 251 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 SPATA12Q7Z6I5 190 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 C20orf144Q9BQM9 153 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 GSN-AS1Q9NRJ2 163 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 SLC39A9Q9NUM3 307 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 NUDT15Q9NV35 164 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 RNF24Q9Y225 148 aa8.01□□□□□ -1.13
USP4-204ENST00000416417 NDUFB4O95168 129 aa8□□□□□ -1.13
USP4-204ENST00000416417 RAB31Q13636 194 aa8□□□□□ -1.13
USP4-204ENST00000416417 RAB32Q13637 225 aa8□□□□□ -1.13
USP4-204ENST00000416417 EXOC3-AS1Q8N2X6 119 aa8□□□□□ -1.13
USP4-204ENST00000416417 C12orf45Q8N5I9 185 aaPredicted RBP8□□□□□ -1.13
USP4-204ENST00000416417 MAPKAPK5-AS1Q8N8E1 139 aa8□□□□□ -1.13
USP4-204ENST00000416417 OR1L4Q8NGR5 311 aa8□□□□□ -1.13
USP4-204ENST00000416417 BLNKQ8WV28 456 aa8□□□□□ -1.13
USP4-204ENST00000416417 C2orf50Q96LR7 162 aa8□□□□□ -1.13
USP4-204ENST00000416417 TRBV19A0A075B6N1 114 aa7.99□□□□□ -1.13
USP4-204ENST00000416417 FGF7P21781 194 aa7.99□□□□□ -1.13
USP4-204ENST00000416417 RNASE4P34096 147 aaKnown RBP7.99□□□□□ -1.13
USP4-204ENST00000416417 FUSP35637 526 aaKnown RBP eCLIP7.99□□□□□ -1.13
USP4-204ENST00000416417 KRTAP10-2P60368 255 aa7.99□□□□□ -1.13
USP4-204ENST00000416417 TMEM252Q8N6L7 170 aa7.99□□□□□ -1.13
USP4-204ENST00000416417 VSIG2Q96IQ7 327 aa7.99□□□□□ -1.13
USP4-204ENST00000416417 TP53TG3Q9ULZ0 132 aa7.99□□□□□ -1.13
USP4-204ENST00000416417 KLF12Q9Y4X4 402 aa7.99□□□□□ -1.13
USP4-204ENST00000416417 IGKV2-40A0A087WW87 121 aaPredicted RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 TRGV1A0A0A0MS02 117 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 C7orf71A4D174 169 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 IGKV2D-40P01614 121 aaPredicted RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 IGHV3-53P01767 116 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 H2AFB2P0C5Z0 115 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 RPL29P47914 159 aaKnown RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 SULT1A1P50225 295 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 GUK1Q16774 197 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 VWC2Q2TAL6 325 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 PRR9Q5T870 116 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 C11orf72Q8NBR9 251 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 AGPAT4-IT1Q9H0P7 198 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 GPN1Q9HCN4 374 aaPredicted RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 LYRM2Q9NU23 88 aaPredicted RBP7.98□□□□□ -1.13
USP4-204ENST00000416417 TIMM9Q9Y5J7 89 aa7.98□□□□□ -1.13
USP4-204ENST00000416417 TRGV2A0A075B6R0 118 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms