RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 HIGD1CA8MV81 97 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 HAX1O00165 279 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 MRPS12O15235 138 aaKnown RBP11.57□□□□□ -0.56
USP4-203ENST00000415188 ZNF253O75346 499 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 GPX1P07203 203 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 C16orf54Q6UWD8 224 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 KIR2DL5AQ8N109 375 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 WNK2Q9Y3S1 2297 aa11.56□□□□□ -0.56
USP4-203ENST00000415188 FBLL1A6NHQ2 334 aaKnown RBP11.56□□□□□ -0.56
USP4-203ENST00000415188 NCBP2LA6PVI3 153 aaKnown RBP11.56□□□□□ -0.56
USP4-203ENST00000415188 TOX4O94842 621 aa11.56□□□□□ -0.56
USP4-203ENST00000415188 HBBP68871 147 aa11.56□□□□□ -0.56
USP4-203ENST00000415188 SIGLEC15Q6ZMC9 328 aa11.56□□□□□ -0.56
USP4-203ENST00000415188 TEX43Q6ZNM6 134 aa11.56□□□□□ -0.56
USP4-203ENST00000415188 RBPMS2Q6ZRY4 209 aaKnown RBP11.56□□□□□ -0.56
USP4-203ENST00000415188 DYNAPQ8N1N2 210 aa11.56□□□□□ -0.56
USP4-203ENST00000415188 VN1R17PQ8TDU5 208 aa11.56□□□□□ -0.56
USP4-203ENST00000415188 FAM103A1Q9BTL3 118 aaKnown RBP11.56□□□□□ -0.56
USP4-203ENST00000415188 A0A1W2PRD5 423 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 A0A1W2PRF3 423 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 A0A1W2PRM7 423 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 ZNF705FA8MVS1 300 aaPredicted RBP11.55□□□□□ -0.56
USP4-203ENST00000415188 ZNF324O75467 553 aaPredicted RBP11.55□□□□□ -0.56
USP4-203ENST00000415188 IGLV2-11P01706 119 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 SNRPCP09234 159 aaKnown RBP11.55□□□□□ -0.56
USP4-203ENST00000415188 ZNF705DP0CH99 300 aaPredicted RBP11.55□□□□□ -0.56
USP4-203ENST00000415188 ZNF705BP0CI00 300 aaPredicted RBP11.55□□□□□ -0.56
USP4-203ENST00000415188 NDPQ00604 133 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 SLAQ13239 276 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 KIAA1644Q3SXP7 199 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 Q56UQ5 140 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 GOLT1AQ6ZVE7 132 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 ZNF414Q96IQ9 312 aa11.55□□□□□ -0.56
USP4-203ENST00000415188 POLR3KQ9Y2Y1 108 aaPredicted RBP11.55□□□□□ -0.56
USP4-203ENST00000415188 F2Z2F3 143 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 H3BTX0 84 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 J3QLI3 93 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 CD24P25063 80 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 PSG9Q00887 426 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 EXOC3-AS1Q8N2X6 119 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 Q8N9W7 124 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 FAM110DQ8TAY7 271 aaPredicted RBP11.54□□□□□ -0.56
USP4-203ENST00000415188 C18orf32Q8TCD1 76 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 ZNF418Q8TF45 676 aaPredicted RBP11.54□□□□□ -0.56
USP4-203ENST00000415188 TBX15Q96SF7 602 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 AAMDCQ9H7C9 122 aa11.54□□□□□ -0.56
USP4-203ENST00000415188 NBEAL1Q6ZS30 2694 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 IGHV7-81A0A0B4J1V7 117 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 A0A1W2PS18 150 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 F8W735 103 aaPredicted RBP11.53□□□□□ -0.56
USP4-203ENST00000415188 RPL7P18124 248 aaKnown RBP11.53□□□□□ -0.56
USP4-203ENST00000415188 AMTP48728 403 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 SCGB2A2Q13296 93 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 PSG3Q16557 428 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 FBLN7Q53RD9 439 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 GDF5OSQ5U4N7 250 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 DMRTA1Q5VZB9 504 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 TOMM20LQ6UXN7 152 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 LINC00322Q6ZN03 302 aaPredicted RBP11.53□□□□□ -0.56
USP4-203ENST00000415188 TEX29Q8N6K0 151 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 C20orf144Q9BQM9 153 aa11.53□□□□□ -0.56
USP4-203ENST00000415188 DIRC3C9JPN6 131 aa11.52□□□□□ -0.56
USP4-203ENST00000415188 FOXA3P55318 350 aaPredicted RBP11.52□□□□□ -0.56
USP4-203ENST00000415188 HILS1P60008 231 aa11.52□□□□□ -0.56
USP4-203ENST00000415188 KLF17Q5JT82 389 aaPredicted RBP11.52□□□□□ -0.56
USP4-203ENST00000415188 Q6AWC8 147 aa11.52□□□□□ -0.56
USP4-203ENST00000415188 C12orf54Q6X4T0 127 aa11.52□□□□□ -0.56
USP4-203ENST00000415188 PRNTQ86SH4 94 aa11.52□□□□□ -0.56
USP4-203ENST00000415188 MRPL52Q86TS9 123 aaKnown RBP11.52□□□□□ -0.56
USP4-203ENST00000415188 SGK494Q96LW2 274 aa11.52□□□□□ -0.56
USP4-203ENST00000415188 ALKBH7Q9BT30 221 aaPredicted RBP11.52□□□□□ -0.56
USP4-203ENST00000415188 PSG8Q9UQ74 426 aa11.52□□□□□ -0.56
USP4-203ENST00000415188 A0A1B0GW15 77 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 NDUFB8O95169 186 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 FSHBP01225 129 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 EGR2P11161 476 aaPredicted RBP11.51□□□□□ -0.57
USP4-203ENST00000415188 GATA3P23771 443 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 CSN1S1P47710 185 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 RAB9AP51151 201 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 TCF24Q7RTU0 167 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 NRN1Q9NPD7 142 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 ESM1Q9NQ30 184 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 FBXL7Q9UJT9 491 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 TENM1Q9UKZ4 2725 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 RAB4AP20338 218 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 GTSF1Q8WW33 167 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 AJUBAQ96IF1 538 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 RCHY1Q96PM5 261 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 C2orf88Q9BSF0 95 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 RABAC1Q9UI14 185 aa11.51□□□□□ -0.57
USP4-203ENST00000415188 NPFFO15130 113 aa11.5□□□□□ -0.57
USP4-203ENST00000415188 CAMPP49913 170 aa11.5□□□□□ -0.57
USP4-203ENST00000415188 COX8CQ7Z4L0 72 aa11.5□□□□□ -0.57
USP4-203ENST00000415188 GATD1Q8NB37 220 aa11.5□□□□□ -0.57
USP4-203ENST00000415188 OR2D3Q8NGH3 330 aa11.5□□□□□ -0.57
USP4-203ENST00000415188 TRAV8-1A0A0A6YYK1 113 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 CTSGP08311 255 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 PMCHP20382 165 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 SAA4P35542 130 aa11.49□□□□□ -0.57
USP4-203ENST00000415188 RIGQ13278 110 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms