RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PGLYRP1O75594 196 aaPredicted RBP5.91□□□□□ -1.46
SCN9A-202ENST00000409435 CLPSP04118 112 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 TFF1P04155 84 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 FSTP19883 344 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 RNASE4P34096 147 aaKnown RBP5.91□□□□□ -1.46
SCN9A-202ENST00000409435 C8orf86Q6ZUL3 223 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.91□□□□□ -1.46
SCN9A-202ENST00000409435 VOPP1Q96AW1 172 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 SCN2AQ99250 2005 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 C3orf79P0CE67 100 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 CD28P10747 220 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 CCL1P22362 96 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 CCL18P55774 89 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 FGFRL1Q8N441 504 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 HIVEP2P31629 2446 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 LHBP01229 141 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 CRYBA4P53673 196 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 HAMPP81172 84 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 NEGR1Q7Z3B1 354 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 WFDC12Q8WWY7 111 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 IGKV3D-20A0A0C4DH25 116 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 PAX4O43316 350 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 PKIGQ9Y2B9 76 aa5.91□□□□□ -1.46
SCN9A-202ENST00000409435 TRGV11A0A075B6L2 103 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 IGHV2-70P01814 119 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 PRB4P10163 310 aaPredicted RBP5.9□□□□□ -1.46
SCN9A-202ENST00000409435 ATP5G3P48201 142 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 MRPL23Q16540 153 aaKnown RBP5.9□□□□□ -1.46
SCN9A-202ENST00000409435 AMELYQ99218 206 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 SYS1-DBNDD2H3BUS1 97 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 CGAP01215 116 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 ACYP1P07311 99 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 TMEM42Q69YG0 159 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 PIFOQ8TCI5 191 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 NPIPB3Q92617 1050 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 MRPL27Q9P0M9 148 aaKnown RBP5.9□□□□□ -1.46
SCN9A-202ENST00000409435 NBASA2RRP1 2371 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 NBEAP1P0C6P0 100 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 LAGE3Q14657 143 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 SIGLEC15Q6ZMC9 328 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 C20orf173Q96LM9 149 aa5.9□□□□□ -1.46
SCN9A-202ENST00000409435 FGF16O43320 207 aa5.9□□□□□ -1.47
SCN9A-202ENST00000409435 GLMPQ8WWB7 406 aa5.9□□□□□ -1.47
SCN9A-202ENST00000409435 SMR3AQ99954 134 aa5.9□□□□□ -1.47
SCN9A-202ENST00000409435 C5orf66Q9H5L9 145 aa5.9□□□□□ -1.47
SCN9A-202ENST00000409435 SPTAN1Q13813 2472 aaKnown RBP5.9□□□□□ -1.47
SCN9A-202ENST00000409435 DAZ1Q9NQZ3 744 aaKnown RBP5.9□□□□□ -1.47
SCN9A-202ENST00000409435 A0A1W2PPM0 123 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 CXCL1P09341 107 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 MORN2Q502X0 79 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 WFDC9Q8NEX5 89 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 TRAV26-1A0A087WT03 109 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 FAM240AA0A1B0GVK7 77 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 IGHV3-48P01763 117 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 EGR2P11161 476 aaPredicted RBP5.89□□□□□ -1.47
SCN9A-202ENST00000409435 SPTSSBQ8NFR3 76 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 TMEM190Q8WZ59 177 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 OVOL3O00110 214 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 RASL10AQ92737 203 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 POLR3KQ9Y2Y1 108 aaPredicted RBP5.89□□□□□ -1.47
SCN9A-202ENST00000409435 SHISA3A0PJX4 238 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 DEFB131AP59861 70 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 PCNX1Q96RV3 2341 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 TAX1BP3O14907 124 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 IGLV1-44P01699 117 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 HOXB4P17483 251 aaPredicted RBP5.89□□□□□ -1.47
SCN9A-202ENST00000409435 MPZP25189 248 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 FOXE3Q13461 319 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 TSKUQ8WUA8 353 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 RNASE7Q9H1E1 156 aaKnown RBP5.89□□□□□ -1.47
SCN9A-202ENST00000409435 PROK2Q9HC23 129 aa5.89□□□□□ -1.47
SCN9A-202ENST00000409435 A0A0U1RRA0 63 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 UPK2O00526 184 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 HILS1P60008 231 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 Q96M66 194 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 C2orf16Q68DN1 1984 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 TRGV1A0A0A0MS02 117 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 MYMXA0A1B0GTQ4 84 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 RPL15P61313 204 aaKnown RBP5.88□□□□□ -1.47
SCN9A-202ENST00000409435 ANXA2RQ3ZCQ2 193 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 SLC25A48Q6ZT89 311 aaKnown RBP5.88□□□□□ -1.47
SCN9A-202ENST00000409435 INS-IGF2F8WCM5 200 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 CHKB-CPT1BH3BT56 60 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 LY6G6CO95867 125 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 CD177Q8N6Q3 437 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 SLC50A1Q9BRV3 221 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 CACNA1CQ13936 2221 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 IGHV3-64A0A075B6Q5 118 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 C15orf61A6NNL5 157 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 ATP6V0E1O15342 81 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 SDK2Q58EX2 2172 aa5.88□□□□□ -1.47
SCN9A-202ENST00000409435 RNF222A6NCQ9 220 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 SRSF3P84103 164 aaKnown RBP5.87□□□□□ -1.47
SCN9A-202ENST00000409435 ANKRD36A6QL64 1941 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 ACACBO00763 2458 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 IGHG2P01859 326 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 FXYD7P58549 80 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 RHPN1-AS1Q9BWJ2 59 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 OTORQ9NRC9 128 aa5.87□□□□□ -1.47
SCN9A-202ENST00000409435 TRBV5-3A0A0A0MS03 114 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 171.6 ms