RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NPYP01303 97 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 IGLV1-47P01700 117 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 GATA1P15976 413 aaPredicted RBP16.47■□□□□ 0.23
CTCF-202ENST00000401394 KLRD1Q13241 179 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 RIGQ13278 110 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 ZNF414Q96IQ9 312 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 PRELID3AQ96N28 172 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 HOXB4P17483 251 aaPredicted RBP16.47■□□□□ 0.23
CTCF-202ENST00000401394 PLP1P60201 277 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 TMEM30BQ3MIR4 351 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 RPEQ96AT9 228 aa16.47■□□□□ 0.23
CTCF-202ENST00000401394 FAM162BQ5T6X4 162 aa16.46■□□□□ 0.23
CTCF-202ENST00000401394 Q6ZS92 163 aa16.46■□□□□ 0.23
CTCF-202ENST00000401394 SHANK2-AS3Q9BTD1 123 aa16.46■□□□□ 0.23
CTCF-202ENST00000401394 EVI2AP22794 236 aa16.46■□□□□ 0.23
CTCF-202ENST00000401394 MRPL51Q4U2R6 128 aaKnown RBP16.46■□□□□ 0.23
CTCF-202ENST00000401394 PVRIGQ6DKI7 326 aa16.46■□□□□ 0.23
CTCF-202ENST00000401394 RNF125Q96EQ8 232 aa16.46■□□□□ 0.23
CTCF-202ENST00000401394 GAGE10A6NGK3 116 aa16.45■□□□□ 0.22
CTCF-202ENST00000401394 SH2D1AO60880 128 aa16.45■□□□□ 0.22
CTCF-202ENST00000401394 CEACAM4O75871 244 aa16.45■□□□□ 0.22
CTCF-202ENST00000401394 VGLL1Q99990 258 aa16.45■□□□□ 0.22
CTCF-202ENST00000401394 EGR2P11161 476 aaPredicted RBP16.44■□□□□ 0.22
CTCF-202ENST00000401394 CSN1S1P47710 185 aa16.44■□□□□ 0.22
CTCF-202ENST00000401394 SPTAN1Q13813 2472 aaKnown RBP16.44■□□□□ 0.22
CTCF-202ENST00000401394 IGHV3OR16-13A0A075B7E8 117 aa16.44■□□□□ 0.22
CTCF-202ENST00000401394 IGHV3-74A0A0B4J1X5 117 aa16.44■□□□□ 0.22
CTCF-202ENST00000401394 FAM57AQ8TBR7 257 aa16.44■□□□□ 0.22
CTCF-202ENST00000401394 ONECUT1Q9UBC0 465 aa16.44■□□□□ 0.22
CTCF-202ENST00000401394 ZNF207O43670 478 aaKnown RBP16.44■□□□□ 0.22
CTCF-202ENST00000401394 MS4A6AQ9H2W1 248 aa16.44■□□□□ 0.22
CTCF-202ENST00000401394 IGKV2D-26A0A0A0MRZ7 120 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 H3BRN7 92 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 MRPS12O15235 138 aaKnown RBP16.43■□□□□ 0.22
CTCF-202ENST00000401394 RBPJQ06330 500 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 KIR3DS1Q14943 382 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 TWIST1Q15672 202 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 SCNM1Q9BWG6 230 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 IGHV3-66A0A0C4DH42 116 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 Q6ZQT7 251 aa16.43■□□□□ 0.22
CTCF-202ENST00000401394 PEF1Q9UBV8 284 aaKnown RBP16.43■□□□□ 0.22
CTCF-202ENST00000401394 SHISA9B4DS77 424 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 K7ERJ3 54 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 ZNF575Q86XF7 245 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 COL6A6A6NMZ7 2263 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 TMEM189A5PLL7 270 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 APOBEC3AP31941 199 aaPredicted RBP16.42■□□□□ 0.22
CTCF-202ENST00000401394 HES1Q14469 280 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 GFRALQ6UXV0 394 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 TMEM14CQ9P0S9 112 aa16.42■□□□□ 0.22
CTCF-202ENST00000401394 PPBPP02775 128 aa16.41■□□□□ 0.22
CTCF-202ENST00000401394 FAM104BQ5XKR9 115 aa16.41■□□□□ 0.22
CTCF-202ENST00000401394 CUBNO60494 3623 aa16.41■□□□□ 0.22
CTCF-202ENST00000401394 PPIAL4CA0A0B4J2A2 164 aa16.41■□□□□ 0.22
CTCF-202ENST00000401394 PPIAL4GP0DN37 164 aa16.41■□□□□ 0.22
CTCF-202ENST00000401394 GRNP28799 593 aaKnown RBP16.41■□□□□ 0.22
CTCF-202ENST00000401394 ERCC8Q13216 396 aa16.41■□□□□ 0.22
CTCF-202ENST00000401394 SPRY2O43597 315 aa16.4■□□□□ 0.22
CTCF-202ENST00000401394 NDPQ00604 133 aa16.4■□□□□ 0.22
CTCF-202ENST00000401394 C3orf36Q3SXR2 165 aa16.4■□□□□ 0.22
CTCF-202ENST00000401394 LINC01560Q8TB33 94 aa16.4■□□□□ 0.22
CTCF-202ENST00000401394 GOSR1O95249 250 aa16.4■□□□□ 0.22
CTCF-202ENST00000401394 CT45A10P0DMU9 189 aa16.4■□□□□ 0.22
CTCF-202ENST00000401394 CKS2P33552 79 aa16.4■□□□□ 0.22
CTCF-202ENST00000401394 FBLL1A6NHQ2 334 aaKnown RBP16.39■□□□□ 0.21
CTCF-202ENST00000401394 GNG7O60262 68 aa16.39■□□□□ 0.21
CTCF-202ENST00000401394 ORMDL3Q8N138 153 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 IGHV3-49A0A0A0MS15 119 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 NDUFS7O75251 213 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 FER1L6-AS1Q8NA97 138 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 A0A0G2JLM5 398 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 PRAC2D3DTV9 90 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 RNF182Q8N6D2 247 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 IFI27L1Q96BM0 104 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 ABHD17AQ96GS6 310 aa16.38■□□□□ 0.21
CTCF-202ENST00000401394 F8W735 103 aaPredicted RBP16.37■□□□□ 0.21
CTCF-202ENST00000401394 ADAMTSL5Q6ZMM2 481 aa16.37■□□□□ 0.21
CTCF-202ENST00000401394 BOD1L2Q8IYS8 172 aa16.37■□□□□ 0.21
CTCF-202ENST00000401394 IGF2RP11717 2491 aa16.37■□□□□ 0.21
CTCF-202ENST00000401394 A1L4Q6 167 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 SMAD7O15105 426 aaKnown RBP16.36■□□□□ 0.21
CTCF-202ENST00000401394 ORM1P02763 201 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 TMEM11P17152 192 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 UFSP1Q6NVU6 142 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 C8orf31Q8N9H6 132 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 PAX8Q06710 450 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 FANCD2OSQ96PS1 177 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 CSTL1Q9H114 145 aa16.36■□□□□ 0.21
CTCF-202ENST00000401394 K7EQM0 130 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 IGFL3Q6UXB1 125 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 AP1S3Q96PC3 154 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 WI2-2373I1.2A0A1W2PRP0 233 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 C9orf118A6NHY6 69 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 PRRG2O14669 202 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 IGHG4P01861 327 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 FXYD2P54710 66 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 KAAG1Q9UBP8 84 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 TRAV26-2A0A0B4J265 109 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 NCBP2LA6PVI3 153 aaKnown RBP16.35■□□□□ 0.21
CTCF-202ENST00000401394 HBDP02042 147 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms