RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CD5LO43866 347 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 SH2D1AO60880 128 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 FAM104BQ5XKR9 115 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 OR8A1Q8NGG7 326 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 ARHGAP32A7KAX9 2087 aa9.95□□□□□ -0.82
SHMT1-205ENST00000395684 LY6HO94772 140 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 PDE6HQ13956 83 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 LY6G5BQ8NDX9 201 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 AAMDCQ9H7C9 122 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 DPM3Q9P2X0 92 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 IGF2RP11717 2491 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 IGKV2-40A0A087WW87 121 aaPredicted RBP9.94□□□□□ -0.82
SHMT1-205ENST00000395684 NDUFA3O95167 84 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 IGKV2D-40P01614 121 aaPredicted RBP9.94□□□□□ -0.82
SHMT1-205ENST00000395684 CDKN1BP46527 198 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 PSG9Q00887 426 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 ZNF672Q499Z4 452 aaPredicted RBP9.94□□□□□ -0.82
SHMT1-205ENST00000395684 NPBQ8NG41 125 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 PRELID3AQ96N28 172 aa9.94□□□□□ -0.82
SHMT1-205ENST00000395684 IGLV11-55A0A075B6I3 123 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 FGF6P10767 208 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 KLRD1Q13241 179 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 MRPL51Q4U2R6 128 aaKnown RBP9.93□□□□□ -0.82
SHMT1-205ENST00000395684 RAB1BQ9H0U4 201 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 TRAV8-6A0A0B4J262 113 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 IGHV3-23P01764 117 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 ZNF575Q86XF7 245 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 ORMDL3Q8N138 153 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 OR11H6Q8NGC7 330 aa9.93□□□□□ -0.82
SHMT1-205ENST00000395684 EGR2P11161 476 aaPredicted RBP9.92□□□□□ -0.82
SHMT1-205ENST00000395684 MFAP4P55083 255 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 NDPQ00604 133 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 PAX8Q06710 450 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 HES1Q14469 280 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 C5orf64Q2M2E5 130 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 PRR25Q96S07 402 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 SMKR1H3BMG3 65 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 GRNP28799 593 aaKnown RBP9.92□□□□□ -0.82
SHMT1-205ENST00000395684 ZNF80P51504 273 aaPredicted RBP9.92□□□□□ -0.82
SHMT1-205ENST00000395684 TCTAP57738 103 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 IGFL4Q6B9Z1 124 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 Q8TAT8 98 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 ABCA4P78363 2273 aa9.92□□□□□ -0.82
SHMT1-205ENST00000395684 COX8CQ7Z4L0 72 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 NPIPB5A8MRT5 1133 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 IGHG4P01861 327 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 CACNG7P62955 275 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 TMEM97Q5BJF2 176 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 VGLL1Q99990 258 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 CST9LQ9H4G1 147 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 C21orf62Q9NYP8 219 aa9.91□□□□□ -0.82
SHMT1-205ENST00000395684 C7orf71A4D174 169 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 HLA-DMBP28068 263 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 NHLH1Q02575 133 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 RNF151Q2KHN1 245 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 LGALS9BQ3B8N2 356 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 LGALS9CQ6DKI2 356 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 ZNF562Q6V9R5 426 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 ZNF48Q96MX3 618 aaPredicted RBP9.9□□□□□ -0.82
SHMT1-205ENST00000395684 RABAC1Q9UI14 185 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 SMAD5-AS1Q9Y6J3 95 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 NPYP01303 97 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 RPS20P60866 119 aaKnown RBP9.9□□□□□ -0.82
SHMT1-205ENST00000395684 TWIST1Q15672 202 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 SAPCD1Q5SSQ6 148 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 DPF1Q92782 380 aa9.9□□□□□ -0.82
SHMT1-205ENST00000395684 S100A7AQ86SG5 101 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 DYNAPQ8N1N2 210 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 TTC9CQ8N5M4 171 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 ARPC1AQ92747 370 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 TLN1Q9Y490 2541 aaKnown RBP9.89□□□□□ -0.83
SHMT1-205ENST00000395684 IGHV3OR16-8A0A075B7F1 116 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 ODF3BA8MYP8 253 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 HBDP02042 147 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 CTSGP08311 255 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 RPL7P18124 248 aaKnown RBP9.89□□□□□ -0.83
SHMT1-205ENST00000395684 CKS2P33552 79 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 CEACAM3P40198 252 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 BOD1L2Q8IYS8 172 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 VKORC1Q9BQB6 163 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 MSRB1Q9NZV6 116 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 PEF1Q9UBV8 284 aaKnown RBP9.89□□□□□ -0.83
SHMT1-205ENST00000395684 NCBP2LA6PVI3 153 aaKnown RBP9.89□□□□□ -0.83
SHMT1-205ENST00000395684 UQCRFS1P47985 274 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 FER1L6-AS1Q8NA97 138 aa9.89□□□□□ -0.83
SHMT1-205ENST00000395684 ANKHD1Q8IWZ3 2542 aaKnown RBP9.88□□□□□ -0.83
SHMT1-205ENST00000395684 GAS8-AS1O95177 125 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 IGLC6P0CF74 106 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 SEC11AP67812 179 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 OCIAD2Q56VL3 154 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 WFDC3Q8IUB2 231 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 OR1N2Q8NGR9 330 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 IFI27L1Q96BM0 104 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 PSMG3-AS1Q96PY0 264 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 IGHV3-35A0A0C4DH35 117 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 GAGE12BA1L429 117 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 FAM90A27PA6NNH2 459 aa9.88□□□□□ -0.83
SHMT1-205ENST00000395684 NDUFS7O75251 213 aa9.87□□□□□ -0.83
SHMT1-205ENST00000395684 PRTN3P24158 256 aa9.87□□□□□ -0.83
SHMT1-205ENST00000395684 THYN1Q9P016 225 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms