RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 TMEM75Q8N9X5 138 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 DEFB104AQ8WTQ1 72 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 C2orf70A6NJV1 201 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 IGKV1-17P01599 117 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 FAM106CPP0CH98 169 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 FAM120AOSQ5T036 256 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 MYO9AB2RTY4 2548 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 THBDP07204 575 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 FABP2P12104 132 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 RUSC1-AS1Q66K80 236 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 LINC00311Q8N616 119 aa12.81□□□□□ -0.36
PCDH1-203ENST00000394536 DLX6P56179 175 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 KLF5Q13887 457 aaPredicted RBP12.8□□□□□ -0.36
PCDH1-203ENST00000394536 M0R381 172 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 PLP1P60201 277 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 CT83Q5H943 113 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 DSCAML1Q8TD84 2053 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 FABP5P3A8MUU1 101 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 VWC2LB2RUY7 222 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 IGFL3Q6UXB1 125 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 PIP4P1Q86T03 277 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 MS4A6AQ9H2W1 248 aa12.8□□□□□ -0.36
PCDH1-203ENST00000394536 PAX1P15863 534 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 HLA-DMBP28068 263 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 CTRLP40313 264 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 C5orf64Q2M2E5 130 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 FAM71F2Q6NXP2 309 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 GFRA4Q9GZZ7 299 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 ERCC8Q13216 396 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 SCGB1D4Q6XE38 83 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 A0A1B0GW15 77 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 GAGE12BA1L429 117 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 RIPPLY3P57055 190 aa12.79□□□□□ -0.36
PCDH1-203ENST00000394536 RPS20P60866 119 aaKnown RBP12.79□□□□□ -0.36
PCDH1-203ENST00000394536 BVES-AS1Q5T3Y7 98 aa12.78□□□□□ -0.36
PCDH1-203ENST00000394536 ZNF491Q8N8L2 437 aa12.78□□□□□ -0.36
PCDH1-203ENST00000394536 MBD6Q96DN6 1003 aa12.78□□□□□ -0.36
PCDH1-203ENST00000394536 NDUFB8O95169 186 aa12.78□□□□□ -0.36
PCDH1-203ENST00000394536 SMIM12Q96EX1 92 aa12.78□□□□□ -0.36
PCDH1-203ENST00000394536 SPCS1Q9Y6A9 102 aa12.78□□□□□ -0.36
PCDH1-203ENST00000394536 METTL26Q96S19 204 aa12.78□□□□□ -0.36
PCDH1-203ENST00000394536 HAX1O00165 279 aa12.77□□□□□ -0.36
PCDH1-203ENST00000394536 GRNP28799 593 aaKnown RBP12.77□□□□□ -0.36
PCDH1-203ENST00000394536 RHOGP84095 191 aa12.77□□□□□ -0.36
PCDH1-203ENST00000394536 C15orf32Q32M92 178 aa12.77□□□□□ -0.36
PCDH1-203ENST00000394536 USP9YO00507 2555 aaPredicted RBP12.77□□□□□ -0.36
PCDH1-203ENST00000394536 SMIM17P0DL12 118 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 ANKRD39Q53RE8 183 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 SIGLEC8Q9NYZ4 499 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 C3orf36Q3SXR2 165 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 GTSCR1Q86UQ5 136 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 RNF182Q8N6D2 247 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 ZNF502Q8TBZ5 544 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 MEGF9Q9H1U4 602 aa12.77□□□□□ -0.37
PCDH1-203ENST00000394536 FAM231BA6NCW3 169 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 Q8N976 141 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 HIST1H4GQ99525 98 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 NHP2Q9NX24 153 aaKnown RBP12.76□□□□□ -0.37
PCDH1-203ENST00000394536 KLF12Q9Y4X4 402 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 PCSK5Q92824 1860 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 NDUFA3O95167 84 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 OR2K2Q8NGT1 345 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 ZNF747Q9BV97 191 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 LOC400499M0QZD8 3231 aa12.76□□□□□ -0.37
PCDH1-203ENST00000394536 NDPQ00604 133 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 SRSF9Q13242 221 aaKnown RBP eCLIP12.75□□□□□ -0.37
PCDH1-203ENST00000394536 LY6EQ16553 131 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 FAM104BQ5XKR9 115 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 SFTA2Q6UW10 78 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 GLMPQ8WWB7 406 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 CST9LQ9H4G1 147 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 SETD2Q9BYW2 2564 aaPredicted RBP12.75□□□□□ -0.37
PCDH1-203ENST00000394536 PSMB11A5LHX3 300 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 SMIM13P0DJ93 91 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 MRPL51Q4U2R6 128 aaKnown RBP12.75□□□□□ -0.37
PCDH1-203ENST00000394536 VGLL1Q99990 258 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 CD5LO43866 347 aa12.75□□□□□ -0.37
PCDH1-203ENST00000394536 NEU4Q8WWR8 484 aaPredicted RBP12.75□□□□□ -0.37
PCDH1-203ENST00000394536 HTN1P15515 57 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 FAM106AQ4KMX7 169 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 A0A1B0GXF2 115 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 K7EIM0 57 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 MLST8Q9BVC4 326 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 SHISA9B4DS77 424 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 NPYP01303 97 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 KIR3DS1Q14943 382 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 VMO1Q7Z5L0 202 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 MSRB1Q9NZV6 116 aa12.74□□□□□ -0.37
PCDH1-203ENST00000394536 I3L2K1 104 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 IGHV3-11P01762 117 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 Q71RC1 249 aaPredicted RBP12.73□□□□□ -0.37
PCDH1-203ENST00000394536 SPATA12Q7Z6I5 190 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 LINC00574Q9H8X3 128 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 PHLDA3Q9Y5J5 127 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 A0A0G2JLM5 398 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 J3QR89 54 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 SIGLEC15Q6ZMC9 328 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 VKORC1Q9BQB6 163 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 KAAG1Q9UBP8 84 aa12.73□□□□□ -0.37
PCDH1-203ENST00000394536 C19orf71A6NCJ1 209 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms