RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 LOC389332A0A1B0GUA5 103 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 RBAKDNA6NC62 111 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 F8W735 103 aaPredicted RBP7.81□□□□□ -1.16
COL17A1-203ENST00000393211 FAM106CPP0CH98 169 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 PRTN3P24158 256 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 DLX1P56177 255 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 LOXL1Q08397 574 aaPredicted RBP7.81□□□□□ -1.16
COL17A1-203ENST00000393211 EBI3Q14213 229 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 KLK9Q2XQG4 91 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 FBXL19-AS1Q494R0 122 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 ZNF672Q499Z4 452 aaPredicted RBP7.81□□□□□ -1.16
COL17A1-203ENST00000393211 FAM106AQ4KMX7 169 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 LDLRAD2Q5SZI1 272 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 UFSP1Q6NVU6 142 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 TIMD4Q96H15 378 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 MAP1LC3AQ9H492 121 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 NXT2Q9NPJ8 142 aaKnown RBP7.81□□□□□ -1.16
COL17A1-203ENST00000393211 KLK9Q9UKQ9 250 aa7.81□□□□□ -1.16
COL17A1-203ENST00000393211 CELSR3Q9NYQ7 3312 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 GAGE10A6NGK3 116 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 FABP5P3A8MUU1 101 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 NDUFS7O75251 213 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 EGR2P11161 476 aaPredicted RBP7.8□□□□□ -1.16
COL17A1-203ENST00000393211 CACNG7P62955 275 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 TWIST1Q15672 202 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 C21orf62-AS1Q17RA5 79 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 HIGD1BQ9P298 99 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 SMPXQ9UHP9 88 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 SH3BGRL2Q9UJC5 107 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 ZGRF1Q86YA3 2104 aa7.8□□□□□ -1.16
COL17A1-203ENST00000393211 LYNX1G3V0Z9 82 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 NPYP01303 97 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 LYNX1P0DP58 116 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 HLA-DRB4P13762 266 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 FCER1GP30273 86 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 MINOS1Q5TGZ0 78 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 ADAMTSL5Q6ZMM2 481 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 Q8N6K4 173 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 ZMAT4Q9H898 229 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 MINOS1-NBL1R4GNA1 71 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 HLA-DRB4X5D2U9 266 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 PRRC2CQ9Y520 2896 aaKnown RBP7.79□□□□□ -1.16
COL17A1-203ENST00000393211 ZNF318Q5VUA4 2279 aa7.79□□□□□ -1.16
COL17A1-203ENST00000393211 DSPP15924 2871 aaKnown RBP7.79□□□□□ -1.16
COL17A1-203ENST00000393211 OTOGLQ3ZCN5 2332 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 IGKV2-40A0A087WW87 121 aaPredicted RBP7.78□□□□□ -1.16
COL17A1-203ENST00000393211 TMSB15BA0A087X1C1 80 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 IGKV2D-40P01614 121 aaPredicted RBP7.78□□□□□ -1.16
COL17A1-203ENST00000393211 PRB3Q04118 309 aaPredicted RBP7.78□□□□□ -1.16
COL17A1-203ENST00000393211 RNF151Q2KHN1 245 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 OR5A1Q8NGJ0 315 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 ASCL2Q99929 193 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 SPOCK3Q9BQ16 436 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 VPS25Q9BRG1 176 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 HILPDAQ9Y5L2 63 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 NBEAQ8NFP9 2946 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 PRSS47A8MTI9 375 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 K7EP34 96 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 CTSGP08311 255 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 HES1Q14469 280 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 KLF17Q5JT82 389 aaPredicted RBP7.78□□□□□ -1.16
COL17A1-203ENST00000393211 ERASQ7Z444 233 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 RNF185Q96GF1 192 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 PSMG3-AS1Q96PY0 264 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 SLC50A1Q9BRV3 221 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 SMAD5-AS1Q9Y6J3 95 aa7.78□□□□□ -1.16
COL17A1-203ENST00000393211 ATP5LO75964 103 aa7.77□□□□□ -1.17
COL17A1-203ENST00000393211 IGHG4P01861 327 aa7.77□□□□□ -1.17
COL17A1-203ENST00000393211 ZNF80P51504 273 aaPredicted RBP7.77□□□□□ -1.17
COL17A1-203ENST00000393211 KIR3DS1Q14943 382 aa7.77□□□□□ -1.17
COL17A1-203ENST00000393211 BCL6BQ8N143 479 aaPredicted RBP7.77□□□□□ -1.17
COL17A1-203ENST00000393211 MRPL53Q96EL3 112 aaKnown RBP7.77□□□□□ -1.17
COL17A1-203ENST00000393211 VGLL1Q99990 258 aa7.77□□□□□ -1.17
COL17A1-203ENST00000393211 HIF1ANQ9NWT6 349 aa7.77□□□□□ -1.17
COL17A1-203ENST00000393211 A0A0G2JLM5 398 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 SNAI2O43623 268 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 TNFRSF6BO95407 300 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 ORM1P02763 201 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 EVI2AP22794 236 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 SRSF1Q07955 248 aaKnown RBP eCLIP7.76□□□□□ -1.17
COL17A1-203ENST00000393211 ZNF575Q86XF7 245 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 Q8N8P6 123 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 OR2K2Q8NGT1 345 aa7.76□□□□□ -1.17
COL17A1-203ENST00000393211 FOXE3Q13461 319 aa7.75□□□□□ -1.17
COL17A1-203ENST00000393211 ODF1Q14990 250 aa7.75□□□□□ -1.17
COL17A1-203ENST00000393211 VMO1Q7Z5L0 202 aa7.75□□□□□ -1.17
COL17A1-203ENST00000393211 FAM110DQ8TAY7 271 aaPredicted RBP7.75□□□□□ -1.17
COL17A1-203ENST00000393211 S4R3C0 116 aa7.75□□□□□ -1.17
COL17A1-203ENST00000393211 A0A1W2PPM0 123 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 NCBP2LA6PVI3 153 aaKnown RBP7.74□□□□□ -1.17
COL17A1-203ENST00000393211 SMKR1H3BMG3 65 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 H3BUT2 72 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 GOSR1O95249 250 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 SMIM13P0DJ93 91 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 LEPP41159 167 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 UQCRFS1P47985 274 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 NDPQ00604 133 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 PRSS57Q6UWY2 283 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 Q8TAT8 98 aa7.74□□□□□ -1.17
COL17A1-203ENST00000393211 LINC01560Q8TB33 94 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms