RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 WDR83OSQ9Y284 106 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 HINT1P49773 126 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-205ENST00000392004 LDLRAD2Q5SZI1 272 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 IGHV7-81A0A0B4J1V7 117 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 F5H697 171 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 GPX1P07203 203 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 GNG4P50150 75 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 RAB9AP51151 201 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 RIPPLY3P57055 190 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 KIAA1644Q3SXP7 199 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 PRSS57Q6UWY2 283 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 GOLT1AQ6ZVE7 132 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 LINC00311Q8N616 119 aa8.13□□□□□ -1.11
COL6A3-205ENST00000392004 TRAV30A0A087WSZ9 112 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 CD5LO43866 347 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 Q8N9W7 124 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 OR1N2Q8NGR9 330 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 ORAOV1Q8WV07 137 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 CACNG8Q8WXS5 425 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 CITED2Q99967 270 aaPredicted RBP8.12□□□□□ -1.11
COL6A3-205ENST00000392004 NIPBLQ6KC79 2804 aaeCLIP8.12□□□□□ -1.11
COL6A3-205ENST00000392004 ESDP10768 282 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 PSMG4Q5JS54 123 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 ZNF331Q9NQX6 463 aaPredicted RBP8.12□□□□□ -1.11
COL6A3-205ENST00000392004 PEF1Q9UBV8 284 aaKnown RBP8.12□□□□□ -1.11
COL6A3-205ENST00000392004 ASH1LQ9NR48 2969 aaKnown RBP8.12□□□□□ -1.11
COL6A3-205ENST00000392004 IGLV2-14P01704 120 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 RNASE2P10153 161 aaKnown RBP8.12□□□□□ -1.11
COL6A3-205ENST00000392004 ID1P41134 155 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 GNB1LQ9BYB4 327 aa8.12□□□□□ -1.11
COL6A3-205ENST00000392004 RPL7P18124 248 aaKnown RBP8.11□□□□□ -1.11
COL6A3-205ENST00000392004 SLURP1P55000 103 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 TCF24Q7RTU0 167 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 STPG4Q8N801 248 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 KCNS1Q96KK3 526 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 ZNF257Q9Y2Q1 563 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 C8orf88P0DMB2 117 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 GCHFRP30047 84 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 SPATA31B1PQ5VZV4 182 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 C15orf62A8K5M9 175 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 PMS2P5A8MQ11 134 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 F2Z2F3 143 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 NBEAP1P0C6P0 100 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 STAG3L2P0CL84 134 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 STAG3L3P0CL85 134 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 CRYBB3P26998 211 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 TREML4Q6UXN2 200 aa8.11□□□□□ -1.11
COL6A3-205ENST00000392004 DCHS2Q6V1P9 2916 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 HELTA6NFD8 242 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 HSBP1O75506 76 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 SRIP30626 198 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 SNRPD3P62318 126 aaKnown RBP8.1□□□□□ -1.11
COL6A3-205ENST00000392004 TMEM78Q5T7P6 136 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 MRPL54Q6P161 138 aaKnown RBP8.1□□□□□ -1.11
COL6A3-205ENST00000392004 RHPN1-AS1Q9BWJ2 59 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 TP53TG3Q9ULZ0 132 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 IGLC2P0DOY2 106 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 IGLC3P0DOY3 106 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 PMCHL1Q16048 86 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 VWC2Q2TAL6 325 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 OR10J3Q5JRS4 329 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 ATOH7Q8N100 152 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 OR10J6PQ8NGY7 276 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 PEMTQ9UBM1 199 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 HLA-DQA1P01909 254 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 CAMPP49913 170 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 UBE2E2Q96LR5 201 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 RNF5Q99942 180 aa8.1□□□□□ -1.11
COL6A3-205ENST00000392004 TRBV20OR9-2A0A075B6H5 130 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 LOC102724200A0A096LPH7 203 aaPredicted RBP8.09□□□□□ -1.11
COL6A3-205ENST00000392004 ZNF324O75467 553 aaPredicted RBP8.09□□□□□ -1.11
COL6A3-205ENST00000392004 LY6G5BQ8NDX9 201 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 OR2D3Q8NGH3 330 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 OR52E5Q8NH55 327 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 ALKBH7Q9BT30 221 aaPredicted RBP8.09□□□□□ -1.11
COL6A3-205ENST00000392004 UFC1Q9Y3C8 167 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 APCSP02743 223 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 CGB3P0DN86 165 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 CGB7P0DN87 165 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 GNG5P63218 68 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 UBE2V1Q13404 147 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 NDUFA4L2Q9NRX3 87 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 YTHDF2Q9Y5A9 579 aaKnown RBP8.09□□□□□ -1.11
COL6A3-205ENST00000392004 PRB2P02812 416 aaPredicted RBP8.09□□□□□ -1.11
COL6A3-205ENST00000392004 TMEM167BQ9NRX6 74 aa8.09□□□□□ -1.11
COL6A3-205ENST00000392004 C9JCJ5 164 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 FCN3O75636 299 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 C3orf79P0CE67 100 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 CD28P10747 220 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 CENPWQ5EE01 88 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 PQLC2Q6ZP29 291 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 EXOC3-AS1Q8N2X6 119 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 FAM19A2Q8N3H0 131 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 C5orf56Q8N8D9 126 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 DDB2Q92466 427 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 CHRDL1Q9BU40 450 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 SEPSECSQ9HD40 501 aaKnown RBP8.08□□□□□ -1.12
COL6A3-205ENST00000392004 TMEM14BQ9NUH8 114 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 M0R3E3 92 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 ITGB1BP1O14713 200 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms