RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 C1orf194Q5T5A4 169 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 NRXN2Q9P2S2 1712 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 M0R1W7 72 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 A0A1W2PPI3 338 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 USMG5Q96IX5 58 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 NKAPP1Q8N9T2 125 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 IGFBPL1Q8WX77 278 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 ATP6V0BQ99437 205 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 CYYR1Q96J86 154 aa11.06□□□□□ -0.64
COL4A1-201ENST00000375820 SLC25A16P16260 332 aa11.06□□□□□ -0.64
COL4A1-201ENST00000375820 ARFGEF3Q5TH69 2177 aa11.06□□□□□ -0.64
COL4A1-201ENST00000375820 CACNA1EQ15878 2313 aa11.06□□□□□ -0.64
COL4A1-201ENST00000375820 NDUFB8O95169 186 aa11.06□□□□□ -0.64
COL4A1-201ENST00000375820 C1QTNF4Q9BXJ3 329 aa11.06□□□□□ -0.64
COL4A1-201ENST00000375820 WNK3Q9BYP7 1800 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 RBMY1FQ15415 496 aaKnown RBP11.05□□□□□ -0.64
COL4A1-201ENST00000375820 CACNA1GO43497 2377 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 BRWD3Q6RI45 1802 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 PYY3Q5JQD4 70 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 ZNRF2Q8NHG8 242 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 MYO7BQ6PIF6 2116 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 PHF3Q92576 2039 aaKnown RBP11.05□□□□□ -0.64
COL4A1-201ENST00000375820 HOXD3P31249 432 aaPredicted RBP11.05□□□□□ -0.64
COL4A1-201ENST00000375820 DLEU1O43261 78 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 PRB2P02812 416 aaPredicted RBP11.05□□□□□ -0.64
COL4A1-201ENST00000375820 ZNF664Q8N3J9 261 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 HEATR1Q9H583 2144 aaKnown RBP11.05□□□□□ -0.64
COL4A1-201ENST00000375820 TRPT1Q86TN4 253 aaKnown RBP11.05□□□□□ -0.64
COL4A1-201ENST00000375820 THAP8Q8NA92 274 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 CADP27708 2225 aa11.05□□□□□ -0.64
COL4A1-201ENST00000375820 MDS2Q8NDY4 140 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 LHBP01229 141 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 HAMPP81172 84 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 TEX36Q5VZQ5 186 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 RNF114Q9Y508 228 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 LINC01619G3V211 115 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 IGLV2-23P01705 113 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 DEFB105AQ8NG35 78 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 IGKV1-39P01597 117 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 IGKV1D-39P04432 117 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 DNAJC30Q96LL9 226 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 SHANK2-AS3Q9BTD1 123 aa11.04□□□□□ -0.64
COL4A1-201ENST00000375820 TRBV25-1A0A075B6N4 114 aa11.03□□□□□ -0.64
COL4A1-201ENST00000375820 NDUFS5O43920 106 aa11.03□□□□□ -0.64
COL4A1-201ENST00000375820 MSMBP08118 114 aa11.03□□□□□ -0.64
COL4A1-201ENST00000375820 XIRP1Q702N8 1843 aaKnown RBP11.03□□□□□ -0.64
COL4A1-201ENST00000375820 LOC285556D6RIA3 1793 aa11.03□□□□□ -0.64
COL4A1-201ENST00000375820 MAJINQ3KP22 176 aa11.03□□□□□ -0.64
COL4A1-201ENST00000375820 REG4Q9BYZ8 158 aa11.03□□□□□ -0.64
COL4A1-201ENST00000375820 TINCRA0A1B0GVN0 87 aa11.02□□□□□ -0.64
COL4A1-201ENST00000375820 B3GALT5-AS1P59052 145 aa11.02□□□□□ -0.64
COL4A1-201ENST00000375820 IGF2BP2-AS1Q96M15 143 aa11.02□□□□□ -0.64
COL4A1-201ENST00000375820 SCRT2Q9NQ03 307 aa11.02□□□□□ -0.64
COL4A1-201ENST00000375820 LCTP09848 1927 aa11.02□□□□□ -0.64
COL4A1-201ENST00000375820 IGHV4-4A0A075B6R2 117 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 A0A0J9YY99 117 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 EREGO14944 169 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 FAM231BA6NCW3 169 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 SPRY2O43597 315 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 TPSG1Q9NRR2 321 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 WIPF3A6NGB9 483 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 H3BMM0 161 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 UBE2WQ96B02 151 aa11.02□□□□□ -0.65
COL4A1-201ENST00000375820 ADCYAP1P18509 176 aa11.01□□□□□ -0.65
COL4A1-201ENST00000375820 FAM120AOSQ5T036 256 aa11.01□□□□□ -0.65
COL4A1-201ENST00000375820 C9orf153Q5TBE3 101 aa11.01□□□□□ -0.65
COL4A1-201ENST00000375820 TRAV1-1A0A0B4J248 108 aa11.01□□□□□ -0.65
COL4A1-201ENST00000375820 COL4A6Q14031 1691 aa11.01□□□□□ -0.65
COL4A1-201ENST00000375820 C2orf66Q6UXQ4 117 aa11.01□□□□□ -0.65
COL4A1-201ENST00000375820 RNF5Q99942 180 aa11.01□□□□□ -0.65
COL4A1-201ENST00000375820 DOCK7Q96N67 2140 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 PRSS29PA6NIE9 313 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 OOSP1A8MZH6 123 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 QRFPP83859 136 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 UBE2V1Q13404 147 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 SOCS3O14543 225 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 RALGAPA2Q2PPJ7 1873 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 hADV29S1A0JD25 119 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 I3L3M4 83 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 KLF5Q13887 457 aaPredicted RBP11□□□□□ -0.65
COL4A1-201ENST00000375820 TCTEX1D4Q5JR98 221 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 C8orf86Q6ZUL3 223 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 CRLF1O75462 422 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 DIAPH2-AS1Q14236 149 aa11□□□□□ -0.65
COL4A1-201ENST00000375820 POLR3KQ9Y2Y1 108 aaPredicted RBP11□□□□□ -0.65
COL4A1-201ENST00000375820 LINC01549A6NIU2 74 aa10.99□□□□□ -0.65
COL4A1-201ENST00000375820 K7ERJ3 54 aa10.99□□□□□ -0.65
COL4A1-201ENST00000375820 HLA-DRB4P13762 266 aa10.99□□□□□ -0.65
COL4A1-201ENST00000375820 HLA-DRB4X5D2U9 266 aa10.99□□□□□ -0.65
COL4A1-201ENST00000375820 CD5LO43866 347 aa10.99□□□□□ -0.65
COL4A1-201ENST00000375820 ANGP03950 147 aaKnown RBP10.99□□□□□ -0.65
COL4A1-201ENST00000375820 OVOL2Q9BRP0 275 aa10.99□□□□□ -0.65
COL4A1-201ENST00000375820 IGKV1-6A0A0C4DH72 117 aa10.99□□□□□ -0.65
COL4A1-201ENST00000375820 PFN1P07737 140 aaKnown RBP10.99□□□□□ -0.65
COL4A1-201ENST00000375820 ANK1P16157 1881 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 C9JQL5 133 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 MMP23AO75900 390 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 Q6ZQT7 251 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 Q9HAA7 133 aa10.98□□□□□ -0.65
COL4A1-201ENST00000375820 GBF1Q92538 1859 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms