RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 PKD1L2Q7Z442 2459 aa6.75□□□□□ -1.33
SNRNP40-202ENST00000373720 NBEAQ8NFP9 2946 aa6.75□□□□□ -1.33
SNRNP40-202ENST00000373720 SPTBN1Q01082 2364 aaKnown RBP6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 PCP4L1A6NKN8 68 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 HSBP1O75506 76 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 SERF1AO75920 110 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 IGHG4P01861 327 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 ELANEP08246 267 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 SRIP30626 198 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 CTAG1AP78358 180 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 DEFA6Q01524 100 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 PDZD11Q5EBL8 140 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 LCE3BQ5TA77 95 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 CLEC19AQ6UXS0 136 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 KLHDC1Q8N7A1 406 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 C18orf32Q8TCD1 76 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 ZC2HC1AQ96GY0 325 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 NPFFR1Q9GZQ6 430 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 NAGKQ9UJ70 344 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 RPH3ALQ9UNE2 315 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 UFC1Q9Y3C8 167 aa6.74□□□□□ -1.33
SNRNP40-202ENST00000373720 ATRXP46100 2492 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 LOC102724200A0A096LPH7 203 aaPredicted RBP6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 H3BUX3 64 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 SCGB1D1O95968 90 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 APOHP02749 345 aaPredicted RBP6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 CTRLP40313 264 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 ID1P41134 155 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 ZNF138P52744 262 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 TCL1AP56279 114 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 DEFB113Q30KQ7 82 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 SMAD5-AS1Q9Y6J3 95 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 ITPR1Q14643 2758 aa6.73□□□□□ -1.33
SNRNP40-202ENST00000373720 CHD8Q9HCK8 2581 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 A0A096LNT2 108 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 CLPSL1A2RUU4 121 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 CRXO43186 299 aaPredicted RBP6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 KALRNO60229 2985 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 FSHBP01225 129 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 MED14OSP0DP75 135 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 DDTP30046 118 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 AMTP48728 403 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 CACNG7P62955 275 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 CFHR3Q02985 330 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 SLAQ13239 276 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 TEX43Q6ZNM6 134 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 SMIM15Q7Z3B0 74 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 TMEM256Q8N2U0 113 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 RNF152Q8N8N0 203 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 GTSF1Q8WW33 167 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 GLMPQ8WWB7 406 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 C20orf144Q9BQM9 153 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 DAZ1Q9NQZ3 744 aaKnown RBP6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 PEF1Q9UBV8 284 aaKnown RBP6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 HSPB8Q9UJY1 196 aa6.72□□□□□ -1.33
SNRNP40-202ENST00000373720 IGHV4-4A0A075B6R2 117 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 LINC01549A6NIU2 74 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 G3V318 75 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 K7EMI3 77 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 LGALS9O00182 355 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 PPP1R17O96001 155 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 LINC00614P0C842 121 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 IGHV4-38-2P0DP08 117 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 CAMPP49913 170 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 Q6YL49 198 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 LINC00322Q6ZN03 302 aaPredicted RBP6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 DEFB125Q8N687 156 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 OR10J6PQ8NGY7 276 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 PGLYRP4Q96LB8 373 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 C17orf77Q96MU5 243 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 ODF3Q96PU9 254 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 TMEM191AQ9H0A3 160 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 NRN1Q9NPD7 142 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 VPREB3Q9UKI3 123 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 TP53TG3Q9ULZ0 132 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 NBASA2RRP1 2371 aa6.71□□□□□ -1.34
SNRNP40-202ENST00000373720 TRAV8-1A0A0A6YYK1 113 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 TRAV2A0A0B4J234 112 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 IGHV7-4-1A0A0J9YVY3 117 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 GRIFINA4D1Z8 144 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 M0R3E3 92 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 SH2D1AO60880 128 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 CA1P00915 261 aaPredicted RBP6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 TGFAP01135 160 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 IGLC6P0CF74 106 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 CD33P20138 364 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 BTF3P20290 206 aaKnown RBP6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 PSMB8P28062 276 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 BRD3OSQ6XYD6 125 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 C8orf86Q6ZUL3 223 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 TCF24Q7RTU0 167 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 REC114Q7Z4M0 266 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 SPATA12Q7Z6I5 190 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 ORMDL3Q8N138 153 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 FER1L6-AS1Q8NA97 138 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 OR4X2Q8NGF9 303 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 C16orf92Q96LL3 132 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 NDUFAF3Q9BU61 184 aa6.7□□□□□ -1.34
SNRNP40-202ENST00000373720 U3KQK5 164 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms