RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 C8orf86Q6ZUL3 223 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 FAM231DQ6ZW35 169 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 NUDT10Q8NFP7 164 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 NUDT11Q96G61 164 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 DAZ1Q9NQZ3 744 aaKnown RBP10.5□□□□□ -0.73
PTPRF-202ENST00000372405 PSG8Q9UQ74 426 aa10.5□□□□□ -0.73
PTPRF-202ENST00000372405 IGHV4OR15-8A0A075B7B6 117 aa10.49□□□□□ -0.73
PTPRF-202ENST00000372405 A0A087WW49 117 aa10.49□□□□□ -0.73
PTPRF-202ENST00000372405 IGHV7-4-1A0A0J9YVY3 117 aa10.49□□□□□ -0.73
PTPRF-202ENST00000372405 CHEK1O14757 476 aa10.49□□□□□ -0.73
PTPRF-202ENST00000372405 PHOX2AO14813 284 aa10.49□□□□□ -0.73
PTPRF-202ENST00000372405 CA1P00915 261 aaPredicted RBP10.49□□□□□ -0.73
PTPRF-202ENST00000372405 KCNIP4Q6PIL6 250 aa10.49□□□□□ -0.73
PTPRF-202ENST00000372405 TMEM183AQ8IXX5 376 aa10.49□□□□□ -0.73
PTPRF-202ENST00000372405 HIVEP1P15822 2718 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 PRAC2D3DTV9 90 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 TRGC2P03986 189 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 HIST2H2BDQ6DRA6 164 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 LCN12Q6JVE5 192 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 ARL6IP6Q8N6S5 226 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 C19orf71A6NCJ1 209 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 K7EMT4 169 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 TYMSP04818 313 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 SRD5A1P18405 259 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 CSN1S1P47710 185 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 RPEL1Q2QD12 228 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 FAM106AQ4KMX7 169 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 WIPF2Q8TF74 440 aaPredicted RBP10.48□□□□□ -0.73
PTPRF-202ENST00000372405 VGLL1Q99990 258 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 SLC50A1Q9BRV3 221 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 RHPN1-AS1Q9BWJ2 59 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 SRD5A3Q9H8P0 318 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 SMPXQ9UHP9 88 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 SELENOKQ9Y6D0 94 aa10.48□□□□□ -0.73
PTPRF-202ENST00000372405 ZNF705GA8MUZ8 300 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-202ENST00000372405 K7EQM0 130 aa10.47□□□□□ -0.73
PTPRF-202ENST00000372405 RNASE1P07998 156 aaKnown RBP10.47□□□□□ -0.73
PTPRF-202ENST00000372405 RAB5BP61020 215 aa10.47□□□□□ -0.73
PTPRF-202ENST00000372405 ZC2HC1AQ96GY0 325 aa10.47□□□□□ -0.73
PTPRF-202ENST00000372405 NSD1Q96L73 2696 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-202ENST00000372405 SERTM2A0A1B0GWG4 89 aa10.46□□□□□ -0.73
PTPRF-202ENST00000372405 TMEM213A2RRL7 107 aa10.46□□□□□ -0.73
PTPRF-202ENST00000372405 SOCS3O14543 225 aa10.46□□□□□ -0.73
PTPRF-202ENST00000372405 DEFB136Q30KP8 78 aa10.46□□□□□ -0.73
PTPRF-202ENST00000372405 ZNF492Q9P255 531 aa10.46□□□□□ -0.73
PTPRF-202ENST00000372405 ZFP30Q9Y2G7 519 aa10.46□□□□□ -0.73
PTPRF-202ENST00000372405 SETD2Q9BYW2 2564 aaPredicted RBP10.46□□□□□ -0.74
PTPRF-202ENST00000372405 SMIM27A0A1W2PRY6 76 aa10.46□□□□□ -0.74
PTPRF-202ENST00000372405 A0A1W2PS18 150 aa10.46□□□□□ -0.74
PTPRF-202ENST00000372405 GATCO43716 136 aaKnown RBP10.46□□□□□ -0.74
PTPRF-202ENST00000372405 FRMD6-AS1P0C7T7 363 aa10.46□□□□□ -0.74
PTPRF-202ENST00000372405 HOXD3P31249 432 aaPredicted RBP10.46□□□□□ -0.74
PTPRF-202ENST00000372405 MEOX2P50222 304 aa10.46□□□□□ -0.74
PTPRF-202ENST00000372405 TCL1AP56279 114 aa10.46□□□□□ -0.74
PTPRF-202ENST00000372405 HILS1P60008 231 aa10.46□□□□□ -0.74
PTPRF-202ENST00000372405 C8orf49Q96NF6 230 aa10.46□□□□□ -0.74
PTPRF-202ENST00000372405 SAV1Q9H4B6 383 aaPredicted RBP10.46□□□□□ -0.74
PTPRF-202ENST00000372405 CDX1P47902 265 aaPredicted RBP10.45□□□□□ -0.74
PTPRF-202ENST00000372405 CRIP1P50238 77 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 SYNJ2BPP57105 145 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 LINC00518Q8N0U6 118 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 Q8TAT8 98 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 GRAMD2BQ96HH9 432 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 C20orf173Q96LM9 149 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 A8MWP6 167 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 ERCC8Q13216 396 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 SCGB2A2Q13296 93 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 REC114Q7Z4M0 266 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 FRZBQ92765 325 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 UFC1Q9Y3C8 167 aa10.45□□□□□ -0.74
PTPRF-202ENST00000372405 FLNBO75369 2602 aaKnown RBP10.44□□□□□ -0.74
PTPRF-202ENST00000372405 SETXQ7Z333 2677 aaKnown RBP10.44□□□□□ -0.74
PTPRF-202ENST00000372405 TRAV9-1A0A075B6T8 112 aa10.44□□□□□ -0.74
PTPRF-202ENST00000372405 NPIPB6E9PJ23 425 aa10.44□□□□□ -0.74
PTPRF-202ENST00000372405 ZNF418Q8TF45 676 aaPredicted RBP10.44□□□□□ -0.74
PTPRF-202ENST00000372405 C16orf92Q96LL3 132 aa10.44□□□□□ -0.74
PTPRF-202ENST00000372405 GPR61Q9BZJ8 451 aa10.44□□□□□ -0.74
PTPRF-202ENST00000372405 BIN3Q9NQY0 253 aa10.44□□□□□ -0.74
PTPRF-202ENST00000372405 LGALS9O00182 355 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BKO60814 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BJP06899 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BOP23527 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BBP33778 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BDP58876 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BCP62807 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST2H2BEQ16778 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.43□□□□□ -0.74
PTPRF-202ENST00000372405 GBGT1Q8N5D6 347 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 C4orf3Q8WVX3 66 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BHQ93079 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 MRPL53Q96EL3 112 aaKnown RBP10.43□□□□□ -0.74
PTPRF-202ENST00000372405 BTF3L4Q96K17 158 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 PRR25Q96S07 402 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BNQ99877 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 HIST1H2BMQ99879 126 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 RPP21Q9H633 154 aaKnown RBP10.43□□□□□ -0.74
PTPRF-202ENST00000372405 NRN1Q9NPD7 142 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 IGKV3-7A0A075B6H7 116 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 SLURP1P55000 103 aa10.43□□□□□ -0.74
PTPRF-202ENST00000372405 KLF5Q13887 457 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms