RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 INTS1Q8N201 2190 aaKnown RBP7.26□□□□□ -1.25
SYNE1-209ENST00000367257 IGKV1D-8A0A087WSZ0 117 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-209ENST00000367257 C15orf62A8K5M9 175 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 RNASE2P10153 161 aaKnown RBP7.25□□□□□ -1.25
SYNE1-209ENST00000367257 SH2D6Q7Z4S9 175 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 PTH2Q96A98 100 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 DEPPQ9NTK1 212 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 FNDC1Q4ZHG4 1894 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-209ENST00000367257 B4DSR2 109 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 LINC00311Q8N616 119 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 ZNF837Q96EG3 531 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-209ENST00000367257 PMS2P5A8MQ11 134 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 CELA3BP08861 270 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 C15orf32Q32M92 178 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 SIGLEC9Q9Y336 463 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 A0A087WX48 190 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 HAX1O00165 279 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 GATA4P43694 442 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 ZNF876PQ49A33 203 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 TMEM200BQ69YZ2 307 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 VMO1Q7Z5L0 202 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 FAM110DQ8TAY7 271 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-209ENST00000367257 SCN8AQ9UQD0 1980 aa7.25□□□□□ -1.25
SYNE1-209ENST00000367257 LSM4Q9Y4Z0 139 aaKnown RBP7.25□□□□□ -1.25
SYNE1-209ENST00000367257 IGHV3-66A0A0C4DH42 116 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 BUB1B-PAK6H3BSN5 160 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 SOCS3O14543 225 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 VWCEQ96DN2 955 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 CCDC88CQ9P219 2028 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 IGHV3OR16-13A0A075B7E8 117 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 IGHV3-74A0A0B4J1X5 117 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 MCRIP2Q9BUT9 160 aaKnown RBP7.24□□□□□ -1.25
SYNE1-209ENST00000367257 IGHV3-35A0A0C4DH35 117 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 ZNF672Q499Z4 452 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-209ENST00000367257 ANKRD29Q8N6D5 301 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 C11orf52Q96A22 123 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 GAFA1Q96PS6 74 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 PYGO2Q9BRQ0 406 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 ZC2HC1BQ5TFG8 222 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 SPRR3Q9UBC9 169 aa7.24□□□□□ -1.25
SYNE1-209ENST00000367257 SEC16AO15027 2179 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 PAX4O43316 350 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 PPIFP30405 207 aaKnown RBP7.23□□□□□ -1.25
SYNE1-209ENST00000367257 AMTNQ6UX39 209 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 TMEM158Q8WZ71 300 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 LIME1Q9H400 295 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 DAZ1Q9NQZ3 744 aaKnown RBP7.23□□□□□ -1.25
SYNE1-209ENST00000367257 POLEQ07864 2286 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 CEND1Q8N111 149 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 C8orf31Q8N9H6 132 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 IGKV1-27A0A075B6S5 117 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 IGHV3-49A0A0A0MS15 119 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 RBM3P98179 157 aaKnown RBP7.23□□□□□ -1.25
SYNE1-209ENST00000367257 FAM201AQ5SY85 155 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 FAM104BQ5XKR9 115 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 SCRT1Q9BWW7 348 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 DENND4CQ5VZ89 1909 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 H3BUA1 57 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 SYNJ2BPP57105 145 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 MDS2Q8NDY4 140 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 MRPL53Q96EL3 112 aaKnown RBP7.23□□□□□ -1.25
SYNE1-209ENST00000367257 C20orf78Q9BR46 151 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 LAMTOR3Q9UHA4 124 aa7.23□□□□□ -1.25
SYNE1-209ENST00000367257 ACYP1P07311 99 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 NTF4P34130 210 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 TDRG1Q3Y452 100 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 ATP1A1-AS1Q5TC04 95 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 LCNL1Q6ZST4 164 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 MRPL55Q7Z7F7 128 aaKnown RBP7.22□□□□□ -1.25
SYNE1-209ENST00000367257 CD177Q8N6Q3 437 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 VOPP1Q96AW1 172 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 TMEM14BQ9NUH8 114 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 CLPSP04118 112 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 RPL32P62910 135 aaKnown RBP7.22□□□□□ -1.25
SYNE1-209ENST00000367257 GATD1Q8NB37 220 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 LYPD6BQ8NI32 183 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 SCN3AQ9NY46 2000 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 SNRNP200O75643 2136 aaKnown RBP7.22□□□□□ -1.25
SYNE1-209ENST00000367257 IGKV2-40A0A087WW87 121 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-209ENST00000367257 SHISA9B4DS77 424 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 IGKV2D-40P01614 121 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-209ENST00000367257 HGFACQ04756 655 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 CRIPAKQ8N1N5 446 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 RNF114Q9Y508 228 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 EPOPA6NHQ4 379 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 IGHV3-11P01762 117 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 FOXI1Q12951 378 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 WIPF2Q8TF74 440 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-209ENST00000367257 LENEPQ9Y5L5 61 aa7.22□□□□□ -1.25
SYNE1-209ENST00000367257 SRRM4A7MD48 611 aaKnown RBP7.21□□□□□ -1.25
SYNE1-209ENST00000367257 K7ERJ3 54 aa7.21□□□□□ -1.25
SYNE1-209ENST00000367257 RBMY1FQ15415 496 aaKnown RBP7.21□□□□□ -1.25
SYNE1-209ENST00000367257 C6orf226Q5I0X4 101 aa7.21□□□□□ -1.25
SYNE1-209ENST00000367257 COL6A3P12111 3177 aa7.21□□□□□ -1.25
SYNE1-209ENST00000367257 MTCL1Q9Y4B5 1905 aaKnown RBP7.21□□□□□ -1.26
SYNE1-209ENST00000367257 TRAV8-3A0A0A6YYJ7 113 aa7.21□□□□□ -1.26
SYNE1-209ENST00000367257 I3L3M4 83 aa7.21□□□□□ -1.26
SYNE1-209ENST00000367257 FOXI2Q6ZQN5 318 aa7.21□□□□□ -1.26
SYNE1-209ENST00000367257 AHCTF1Q8WYP5 2266 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms