RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 BVES-AS1Q5T3Y7 98 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 ZNF414Q96IQ9 312 aa9.55□□□□□ -0.88
CLIP3-201ENST00000360535 LOC105371242A0A075B767 164 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 H3BRN7 92 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 ORM1P02763 201 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 OR10AG1Q8NH19 301 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 PRELID3AQ96N28 172 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 SPG11Q96JI7 2443 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 NPIPB6E9PJ23 425 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 CACNG7P62955 275 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 DPM3Q9P2X0 92 aa9.54□□□□□ -0.88
CLIP3-201ENST00000360535 NCOR2Q9Y618 2525 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 TAX1BP3O14907 124 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 SH2D1AO60880 128 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 TM4SF20Q53R12 229 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 PET117Q6UWS5 81 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 TMEM14CQ9P0S9 112 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 TNFRSF14Q92956 283 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 ZNF747Q9BV97 191 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 SCRT2Q9NQ03 307 aa9.53□□□□□ -0.88
CLIP3-201ENST00000360535 GPR183P32249 361 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 CKS2P33552 79 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 PRSS57Q6UWY2 283 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 RAB37Q96AX2 223 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 VGLL1Q99990 258 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 SIGLEC8Q9NYZ4 499 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 C1RLQ9NZP8 487 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 MSRB1Q9NZV6 116 aa9.52□□□□□ -0.88
CLIP3-201ENST00000360535 CELSR1Q9NYQ6 3014 aa9.52□□□□□ -0.89
CLIP3-201ENST00000360535 CRXO43186 299 aaPredicted RBP9.52□□□□□ -0.89
CLIP3-201ENST00000360535 CDKN1BP46527 198 aa9.52□□□□□ -0.89
CLIP3-201ENST00000360535 NMUP48645 174 aa9.52□□□□□ -0.89
CLIP3-201ENST00000360535 NDPQ00604 133 aa9.52□□□□□ -0.89
CLIP3-201ENST00000360535 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.52□□□□□ -0.89
CLIP3-201ENST00000360535 ZNF207O43670 478 aaKnown RBP9.52□□□□□ -0.89
CLIP3-201ENST00000360535 MFAP4P55083 255 aa9.52□□□□□ -0.89
CLIP3-201ENST00000360535 ERCC8Q13216 396 aa9.52□□□□□ -0.89
CLIP3-201ENST00000360535 HRNRQ86YZ3 2850 aaPredicted RBP9.52□□□□□ -0.89
CLIP3-201ENST00000360535 FAM231BA6NCW3 169 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 EVI2AP22794 236 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 C12orf54Q6X4T0 127 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 C21orf62Q9NYP8 219 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 ECSCRQ19T08 205 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 SMIM15Q7Z3B0 74 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 THYN1Q9P016 225 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 JKAMPQ9P055 326 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 CHD8Q9HCK8 2581 aa9.51□□□□□ -0.89
CLIP3-201ENST00000360535 IGHV2-70DA0A0C4DH43 119 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 EGR2P11161 476 aaPredicted RBP9.5□□□□□ -0.89
CLIP3-201ENST00000360535 RHOGP84095 191 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 PVRIGQ6DKI7 326 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 IGF2-ASQ6U949 168 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 CCL21O00585 134 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 ZNF80P51504 273 aaPredicted RBP9.5□□□□□ -0.89
CLIP3-201ENST00000360535 PSG9Q00887 426 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 CDSNQ15517 529 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 MRPL51Q4U2R6 128 aaKnown RBP9.5□□□□□ -0.89
CLIP3-201ENST00000360535 DYNAPQ8N1N2 210 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 RNF182Q8N6D2 247 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 ARPC1AQ92747 370 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 TRAV8-6A0A0B4J262 113 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 J3KRW8 73 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 GAS8-AS1O95177 125 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 C5orf64Q2M2E5 130 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 ORMDL3Q8N138 153 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 FANCD2OSQ96PS1 177 aa9.5□□□□□ -0.89
CLIP3-201ENST00000360535 NPYP01303 97 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 RIPPLY3P57055 190 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 LINC01545Q5VT33 79 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 AP1S3Q96PC3 154 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 C7orf71A4D174 169 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 OVOL3O00110 214 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 GATA1P15976 413 aaPredicted RBP9.49□□□□□ -0.89
CLIP3-201ENST00000360535 HIST1H1AQ02539 215 aaPredicted RBP9.49□□□□□ -0.89
CLIP3-201ENST00000360535 TCF15Q12870 199 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 FAM104BQ5XKR9 115 aa9.49□□□□□ -0.89
CLIP3-201ENST00000360535 LY6LH3BQJ8 138 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 NDUFS7O75251 213 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 CEACAM3P40198 252 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 DEFB125Q8N687 156 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 FER1L6-AS1Q8NA97 138 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 TIMD4Q96H15 378 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 TTTY13Q9BZ97 58 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 ZFHX3Q15911 3703 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 A0A096LNJ9 63 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 PRSS47A8MTI9 375 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 CST9LQ9H4G1 147 aa9.48□□□□□ -0.89
CLIP3-201ENST00000360535 COX8AP10176 69 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 PRR25Q96S07 402 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 DKK2Q9UBU2 259 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 RABAC1Q9UI14 185 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 HIVEP3Q5T1R4 2406 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 TRAV30A0A087WSZ9 112 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 PRAC2D3DTV9 90 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 MRPS12O15235 138 aaKnown RBP9.47□□□□□ -0.89
CLIP3-201ENST00000360535 HOXB4P17483 251 aaPredicted RBP9.47□□□□□ -0.89
CLIP3-201ENST00000360535 TMEM97Q5BJF2 176 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 PCP2Q8IVA1 136 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 WI2-2373I1.2A0A1W2PRP0 233 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 C2orf91Q6ZV80 131 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms