RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 IGF2BP2-AS1Q96M15 143 aa12.28□□□□□ -0.44
CLN3-203ENST00000357806 IGHV3OR16-12A0A075B7B8 117 aa12.27□□□□□ -0.44
CLN3-203ENST00000357806 SMLR1H3BR10 107 aa12.27□□□□□ -0.44
CLN3-203ENST00000357806 M0R2Z0 102 aa12.27□□□□□ -0.44
CLN3-203ENST00000357806 INSP01308 110 aa12.27□□□□□ -0.44
CLN3-203ENST00000357806 PRB4P10163 310 aaPredicted RBP12.27□□□□□ -0.44
CLN3-203ENST00000357806 RAB2AP61019 212 aa12.27□□□□□ -0.44
CLN3-203ENST00000357806 UBE2L3P68036 154 aaKnown RBP12.27□□□□□ -0.44
CLN3-203ENST00000357806 NEU1Q99519 415 aa12.27□□□□□ -0.44
CLN3-203ENST00000357806 CXorf65A6NEN9 183 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 SMIM9A6NGZ8 99 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 PRAC2D3DTV9 90 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 RBMY1A1P0DJD3 496 aaKnown RBP12.27□□□□□ -0.45
CLN3-203ENST00000357806 RBMY1CP0DJD4 496 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 SERF2P84101 59 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 PMS2P11Q13670 270 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 RBMY1FQ15415 496 aaKnown RBP12.27□□□□□ -0.45
CLN3-203ENST00000357806 RPL7L1Q6DKI1 246 aaKnown RBP12.27□□□□□ -0.45
CLN3-203ENST00000357806 FAM122CQ6P4D5 195 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 EXOC3-AS1Q8N2X6 119 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 OR10G4Q8NGN3 311 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 OR10G9Q8NGN4 311 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 OR10G7Q8NGN6 311 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 C11orf45Q8TAV5 145 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 GNPNAT1Q96EK6 184 aaPredicted RBP12.27□□□□□ -0.45
CLN3-203ENST00000357806 ZNF503Q96F45 646 aa12.27□□□□□ -0.45
CLN3-203ENST00000357806 M0R3E3 92 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 TAAR5O14804 337 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 MBP02144 154 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 PQLC2Q6ZP29 291 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 BAP18Q8IXM2 172 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 PHYHIPLQ96FC7 376 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 TMEM208Q9BTX3 173 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 SH3BGRL3Q9H299 93 aa12.26□□□□□ -0.45
CLN3-203ENST00000357806 NUPR2A6NF83 97 aa12.25□□□□□ -0.45
CLN3-203ENST00000357806 CRXO43186 299 aaPredicted RBP12.25□□□□□ -0.45
CLN3-203ENST00000357806 JTBO76095 146 aa12.25□□□□□ -0.45
CLN3-203ENST00000357806 CDKN1BP46527 198 aa12.25□□□□□ -0.45
CLN3-203ENST00000357806 CDC34P49427 236 aaPredicted RBP12.25□□□□□ -0.45
CLN3-203ENST00000357806 ZNF345Q14585 488 aa12.25□□□□□ -0.45
CLN3-203ENST00000357806 ICAM4Q14773 271 aa12.25□□□□□ -0.45
CLN3-203ENST00000357806 C1orf158Q8N1D5 194 aa12.25□□□□□ -0.45
CLN3-203ENST00000357806 TRAV12-2A0A075B6T6 113 aa12.24□□□□□ -0.45
CLN3-203ENST00000357806 NPIPB6E9PJ23 425 aa12.24□□□□□ -0.45
CLN3-203ENST00000357806 LYPD1Q8N2G4 141 aa12.24□□□□□ -0.45
CLN3-203ENST00000357806 TMEM189A5PLL7 270 aa12.23□□□□□ -0.45
CLN3-203ENST00000357806 HMSDA8MTL9 139 aa12.23□□□□□ -0.45
CLN3-203ENST00000357806 EIF3GO75821 320 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLN3-203ENST00000357806 HBE1P02100 147 aa12.23□□□□□ -0.45
CLN3-203ENST00000357806 TSPOP30536 169 aa12.23□□□□□ -0.45
CLN3-203ENST00000357806 NANOS2P60321 138 aaKnown RBP12.23□□□□□ -0.45
CLN3-203ENST00000357806 ODF3Q96PU9 254 aa12.23□□□□□ -0.45
CLN3-203ENST00000357806 RANP62826 216 aaKnown RBP12.22□□□□□ -0.45
CLN3-203ENST00000357806 RRN3P1Q2M238 152 aa12.22□□□□□ -0.45
CLN3-203ENST00000357806 TMEM256Q8N2U0 113 aa12.22□□□□□ -0.45
CLN3-203ENST00000357806 RPP25LQ8N5L8 163 aaKnown RBP12.22□□□□□ -0.45
CLN3-203ENST00000357806 Q9H3A6 140 aa12.22□□□□□ -0.45
CLN3-203ENST00000357806 HMGB3O15347 200 aaKnown RBP12.21□□□□□ -0.45
CLN3-203ENST00000357806 STAG3L2P0CL84 134 aa12.21□□□□□ -0.45
CLN3-203ENST00000357806 STAG3L3P0CL85 134 aa12.21□□□□□ -0.45
CLN3-203ENST00000357806 ARL14EPLP0DKL9 152 aa12.21□□□□□ -0.45
CLN3-203ENST00000357806 LEPP41159 167 aa12.21□□□□□ -0.45
CLN3-203ENST00000357806 KCNRGQ8N5I3 272 aa12.21□□□□□ -0.45
CLN3-203ENST00000357806 OR11H4Q8NGC9 324 aa12.21□□□□□ -0.45
CLN3-203ENST00000357806 ARPC5LQ9BPX5 153 aa12.21□□□□□ -0.45
CLN3-203ENST00000357806 LOC102723971A0A1B0GUV8 181 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 CT45A10P0DMU9 189 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 CSN1S1P47710 185 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 Q6ZNX1 250 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 PHLDA1Q8WV24 401 aaPredicted RBP12.21□□□□□ -0.46
CLN3-203ENST00000357806 RAB24Q969Q5 203 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 LINC00477Q96M19 166 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 C20orf144Q9BQM9 153 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 ACTR3CQ9C0K3 210 aaPredicted RBP12.21□□□□□ -0.46
CLN3-203ENST00000357806 CYTL1Q9NRR1 136 aa12.21□□□□□ -0.46
CLN3-203ENST00000357806 KMT2CQ8NEZ4 4911 aaKnown RBP12.2□□□□□ -0.46
CLN3-203ENST00000357806 IGKV2-40A0A087WW87 121 aaPredicted RBP12.2□□□□□ -0.46
CLN3-203ENST00000357806 A0A0D9SG52 128 aa12.2□□□□□ -0.46
CLN3-203ENST00000357806 IGKV2D-40P01614 121 aaPredicted RBP12.2□□□□□ -0.46
CLN3-203ENST00000357806 FAM74A1Q5RGS3 127 aa12.2□□□□□ -0.46
CLN3-203ENST00000357806 CEMP1Q6PRD7 247 aaPredicted RBP12.2□□□□□ -0.46
CLN3-203ENST00000357806 C9orf47Q6ZRZ4 202 aa12.2□□□□□ -0.46
CLN3-203ENST00000357806 CELA1Q9UNI1 258 aa12.2□□□□□ -0.46
CLN3-203ENST00000357806 KLK5Q9Y337 293 aaPredicted RBP12.2□□□□□ -0.46
CLN3-203ENST00000357806 TENM2Q9NT68 2774 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 EMP1P54849 157 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 ERCC8Q13216 396 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 AKR1C8PQ5T2L2 129 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 TMEM78Q5T7P6 136 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 GFI1BQ5VTD9 330 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 LYSTQ99698 3801 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 OTORQ9NRC9 128 aa12.19□□□□□ -0.46
CLN3-203ENST00000357806 TEX48A0A1B0GUV7 120 aa12.18□□□□□ -0.46
CLN3-203ENST00000357806 KANTRA0A1W2PQU2 76 aa12.18□□□□□ -0.46
CLN3-203ENST00000357806 RXFP4Q8TDU9 374 aa12.18□□□□□ -0.46
CLN3-203ENST00000357806 ST6GAL2Q96JF0 529 aa12.18□□□□□ -0.46
CLN3-203ENST00000357806 LINC01587Q99440 93 aa12.18□□□□□ -0.46
CLN3-203ENST00000357806 AGPAT4-IT1Q9H0P7 198 aa12.18□□□□□ -0.46
CLN3-203ENST00000357806 RBAKDNA6NC62 111 aa12.17□□□□□ -0.46
CLN3-203ENST00000357806 ZNF705GA8MUZ8 300 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms