RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 Q86TA4 180 aa10.91□□□□□ -0.66
COL6A3-202ENST00000347401 LCN12Q6JVE5 192 aa10.91□□□□□ -0.66
COL6A3-202ENST00000347401 ZNF329Q86UD4 541 aa10.91□□□□□ -0.66
COL6A3-202ENST00000347401 AZU1P20160 251 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 BVES-AS1Q5T3Y7 98 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 C1orf122Q6ZSJ8 110 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 TMEM14BQ9NUH8 114 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 J3KT08 172 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 STPG4Q8N801 248 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 I3L3M4 83 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 NABP1Q96AH0 204 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 C20orf78Q9BR46 151 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 PYGO2Q9BRQ0 406 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 TMEM14CQ9P0S9 112 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 SRRM4A7MD48 611 aaKnown RBP10.9□□□□□ -0.66
COL6A3-202ENST00000347401 FAM104BQ5XKR9 115 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 SPATA25Q9BR10 227 aa10.9□□□□□ -0.66
COL6A3-202ENST00000347401 SPINK2P20155 84 aa10.9□□□□□ -0.67
COL6A3-202ENST00000347401 GATA2P23769 480 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-202ENST00000347401 GFI1Q99684 422 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV1-2P23083 117 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 ZCCHC24Q8N2G6 241 aaKnown RBP10.89□□□□□ -0.67
COL6A3-202ENST00000347401 CACNA1AO00555 2505 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 HLA-DRB4P13762 266 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 LY6EQ16553 131 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 HLA-DRB4X5D2U9 266 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 C3orf36Q3SXR2 165 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 ZNF876PQ49A33 203 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 TSSC4Q9Y5U2 329 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-202ENST00000347401 CELA2AP08217 269 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 QRFPP83859 136 aa10.89□□□□□ -0.67
COL6A3-202ENST00000347401 NRTNQ99748 197 aa10.88□□□□□ -0.67
COL6A3-202ENST00000347401 PRSS47A8MTI9 375 aa10.88□□□□□ -0.67
COL6A3-202ENST00000347401 STPG1Q5TH74 334 aa10.88□□□□□ -0.67
COL6A3-202ENST00000347401 PFN1P07737 140 aaKnown RBP10.88□□□□□ -0.67
COL6A3-202ENST00000347401 EXOC3-AS1Q8N2X6 119 aa10.88□□□□□ -0.67
COL6A3-202ENST00000347401 FAM216BQ8N7L0 139 aa10.88□□□□□ -0.67
COL6A3-202ENST00000347401 COA6Q5JTJ3 125 aaKnown RBP10.87□□□□□ -0.67
COL6A3-202ENST00000347401 KIR2DL5BA0A0G2JN68 375 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 KIR2DL5BA0A0G2JPC4 375 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 FGF6P10767 208 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 KIR2DL5AQ8N109 375 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 SHANK2-AS3Q9BTD1 123 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 LSM4Q9Y4Z0 139 aaKnown RBP10.87□□□□□ -0.67
COL6A3-202ENST00000347401 COLCA1Q6ZS62 124 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 FOXG1P55316 489 aaPredicted RBP10.87□□□□□ -0.67
COL6A3-202ENST00000347401 C5orf64Q2M2E5 130 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV2-70DA0A0C4DH43 119 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 LYZL4Q96KX0 146 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 ADCYAP1P18509 176 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 CDCP2Q5VXM1 449 aa10.87□□□□□ -0.67
COL6A3-202ENST00000347401 CEACAM8P31997 349 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-202ENST00000347401 hADV29S1A0JD25 119 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 CCDC168Q8NDH2 2452 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV3-66A0A0C4DH42 116 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 EREGO14944 169 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 IGKV1-5P01602 117 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 CCL3L1P16619 93 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 IL15RAQ13261 267 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 C15orf62A8K5M9 175 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 H0YJW9 148 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 HERVK_113P63121 156 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 AMN1Q8IY45 258 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 ZNF625Q96I27 306 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-202ENST00000347401 SPXQ9BT56 116 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 DAZ1Q9NQZ3 744 aaKnown RBP10.86□□□□□ -0.67
COL6A3-202ENST00000347401 RHOHQ15669 191 aa10.86□□□□□ -0.67
COL6A3-202ENST00000347401 A0A0U1RRA0 63 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 CFHR1Q03591 330 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 CD33P20138 364 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 LTBP1Q14766 1721 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV3-49A0A0A0MS15 119 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 IGKV1D-43A0A0B4J1Z2 117 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 TIAF1O95411 115 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 ETDBQ3ZM63 59 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 C5orf47Q569G3 176 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 SIGLEC8Q9NYZ4 499 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV3-35A0A0C4DH35 117 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 PSCAO43653 123 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV1-8P0DP01 117 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 MST1P26927 711 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 IGFBPL1Q8WX77 278 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 HTN3P15516 51 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 KLF5Q13887 457 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-202ENST00000347401 IGKV2-40A0A087WW87 121 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-202ENST00000347401 PRR19A6NJB7 356 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 NPYP01303 97 aa10.85□□□□□ -0.67
COL6A3-202ENST00000347401 IGKV2D-40P01614 121 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-202ENST00000347401 LYPD3O95274 346 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 SCRT1Q9BWW7 348 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 LENEPQ9Y5L5 61 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV3OR16-13A0A075B7E8 117 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 IGHV3-74A0A0B4J1X5 117 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 C2CD3Q4AC94 2353 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 C11orf52Q96A22 123 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 C7orf69Q9H7B7 122 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 VSIRQ9H7M9 311 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 ZNF493Q6ZR52 646 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 ATP6V0E2Q8NHE4 81 aa10.84□□□□□ -0.67
COL6A3-202ENST00000347401 GATA3P23771 443 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms