RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 LHBP01229 141 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 CD28P10747 220 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 ERVK11-1P61568 191 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 ARTNQ5T4W7 220 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 Q6AWC8 147 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.08□□□□□ -1.28
RTN3-202ENST00000339997 C1orf147Q96MC9 270 aaPredicted RBP7.08□□□□□ -1.28
RTN3-202ENST00000339997 GBF1Q92538 1859 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 Q0VFX4 171 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 ZNF876PQ49A33 203 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 DEFB121Q5J5C9 76 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 BRD3OSQ6XYD6 125 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 CHCHD1Q96BP2 118 aaKnown RBP7.08□□□□□ -1.28
RTN3-202ENST00000339997 PIMREGQ9BSJ6 248 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 SRRM5B3KS81 715 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 SPINK8P0C7L1 97 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 IGLC2P0DOY2 106 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 IGLC3P0DOY3 106 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 HIST1H4AP62805 103 aaKnown RBP7.08□□□□□ -1.28
RTN3-202ENST00000339997 TMEM200BQ69YZ2 307 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 TMEM126AQ9H061 195 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 ERG28Q9UKR5 140 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 KIAA1671Q9BY89 1806 aa7.08□□□□□ -1.28
RTN3-202ENST00000339997 TRAV8-3A0A0A6YYJ7 113 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 SRRM4A7MD48 611 aaKnown RBP7.07□□□□□ -1.28
RTN3-202ENST00000339997 K7ERJ3 54 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 ESDP10768 282 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 IGFBPL1Q8WX77 278 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 RS1O15537 224 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 IGKV1-39P01597 117 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 IGKV1D-39P04432 117 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 SLC25A48Q6ZT89 311 aaKnown RBP7.07□□□□□ -1.28
RTN3-202ENST00000339997 IGKV1D-17A0A075B6S4 117 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 J3QW42 95 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 WNT2P09544 360 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 Q6P435 159 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 OR9G4Q8NGQ1 327 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 CHCHD5Q9BSY4 110 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 SPXQ9BT56 116 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 NBPF19A0A087WUL8 3843 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 TRGV4A0A0C4DH28 118 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 KNCNA6PVL3 124 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 NUPR1O60356 82 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 SH2D1AO60880 128 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 LYPD2Q6UXB3 125 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 NEGR1Q7Z3B1 354 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 RNF182Q8N6D2 247 aa7.07□□□□□ -1.28
RTN3-202ENST00000339997 TSSC4Q9Y5U2 329 aaPredicted RBP7.07□□□□□ -1.28
RTN3-202ENST00000339997 KLF2Q9Y5W3 355 aaPredicted RBP7.07□□□□□ -1.28
RTN3-202ENST00000339997 TRAV8-4A0A0B4J246 113 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 C9JAW5 83 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 TOMM40O96008 361 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 CGB7P0DN87 165 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 JMJD1CQ15652 2540 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 TRAV26-2A0A0B4J265 109 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 A0A1B0GW64 132 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 TMEM42Q69YG0 159 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 FCN3O75636 299 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 LAGE3Q14657 143 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 GATD1Q8NB37 220 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 LGALS1P09382 135 aaKnown RBP7.06□□□□□ -1.28
RTN3-202ENST00000339997 ZFAND6Q6FIF0 208 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 RNASE6Q93091 150 aaKnown RBP7.06□□□□□ -1.28
RTN3-202ENST00000339997 CHAC1Q9BUX1 264 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 YAE1D1Q9NRH1 226 aa7.06□□□□□ -1.28
RTN3-202ENST00000339997 LYL1P12980 280 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 ZNF415Q09FC8 603 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 FAM168AQ92567 244 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 VOPP1Q96AW1 172 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 RBMY1FQ15415 496 aaKnown RBP7.05□□□□□ -1.28
RTN3-202ENST00000339997 MORN3Q6PF18 240 aaPredicted RBP7.05□□□□□ -1.28
RTN3-202ENST00000339997 COLCA1Q6ZS62 124 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 TMEM75Q8N9X5 138 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 SLC25A2Q9BXI2 301 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 NCOR2Q9Y618 2525 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 IGHV2-26A0A0B4J1V2 119 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 A0A1B0GW15 77 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 H3BMG7 143 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 LINC00158P58513 81 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 C1orf159Q96HA4 380 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 TRAV13-1A0A0B4J241 112 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 CCL25O15444 150 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 ATXN8Q156A1 80 aa7.05□□□□□ -1.28
RTN3-202ENST00000339997 MBNL3Q9NUK0 354 aaKnown RBP7.05□□□□□ -1.28
RTN3-202ENST00000339997 IGLV3-32A0A0A0MS00 114 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 M0R2P5 195 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 C8orf49Q96NF6 230 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 CSTL1Q9H114 145 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 THADAQ6YHU6 1953 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 H3BMM0 161 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 PAX4O43316 350 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 CD5LO43866 347 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 PPBPP02775 128 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 PRB1P04280 392 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 RNASE2P10153 161 aaKnown RBP7.04□□□□□ -1.28
RTN3-202ENST00000339997 RPRMLQ8N4K4 120 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 UBE2WQ96B02 151 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 ZNF503-AS2A6NEH8 195 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 ORMDL2Q53FV1 153 aa7.04□□□□□ -1.28
RTN3-202ENST00000339997 PVRIGQ6DKI7 326 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms