RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 SPINK4O60575 86 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 SCGB2A1O75556 95 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 COL8A2P25067 703 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 SLC35B1P78383 322 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 TDRG1Q3Y452 100 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 HCP5Q6MZN7 132 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 OR4F17Q8NGA8 305 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 GTSF1Q8WW33 167 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 NEU4Q8WWR8 484 aaPredicted RBP8.48□□□□□ -1.05
RTN3-201ENST00000338850 TMEM158Q8WZ71 300 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 ST20Q9HBF5 79 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 DPM3Q9P2X0 92 aa8.48□□□□□ -1.05
RTN3-201ENST00000338850 LOC102724200A0A096LPH7 203 aaPredicted RBP8.47□□□□□ -1.05
RTN3-201ENST00000338850 M0R2Z0 102 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 HTR1DP28221 377 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 GPR6P46095 362 aaPredicted RBP8.47□□□□□ -1.05
RTN3-201ENST00000338850 SRSF2Q01130 221 aaKnown RBP8.47□□□□□ -1.05
RTN3-201ENST00000338850 RIGQ13278 110 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 EBI3Q14213 229 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 FAM120AOSQ5T036 256 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 CCDC144NLQ6NUI1 221 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 PET117Q6UWS5 81 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 SIGLEC15Q6ZMC9 328 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 ZNF493Q6ZR52 646 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 BLNKQ8WV28 456 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 FAM103A1Q9BTL3 118 aaKnown RBP8.47□□□□□ -1.05
RTN3-201ENST00000338850 TMEM70Q9BUB7 260 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 BPESC1Q9GZL8 116 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 LPAR2Q9HBW0 351 aa8.47□□□□□ -1.05
RTN3-201ENST00000338850 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.47□□□□□ -1.052e-17■■■■□ 24.5
RTN3-201ENST00000338850 IGLV11-55A0A075B6I3 123 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 HLA-DRB1P01911 266 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 CD33P20138 364 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 PRTN3P24158 256 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 CNTFRP26992 372 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 HNRNPA3P51991 378 aaKnown RBP8.46□□□□□ -1.06
RTN3-201ENST00000338850 LYZP61626 148 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 PLGLAQ15195 96 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 MINOS1Q5TGZ0 78 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 PRR27Q6MZM9 219 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 LINC00322Q6ZN03 302 aaPredicted RBP8.46□□□□□ -1.06
RTN3-201ENST00000338850 IL17RELQ6ZVW7 336 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 SPATA12Q7Z6I5 190 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 ZNF491Q8N8L2 437 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 DPF1Q92782 380 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 RNF125Q96EQ8 232 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 TIMD4Q96H15 378 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 URB1-AS1Q96HZ7 61 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 TXN2Q99757 166 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 NPFFR1Q9GZQ6 430 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 WNT10AQ9GZT5 417 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 FBXL15Q9H469 300 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 MINOS1-NBL1R4GNA1 71 aa8.46□□□□□ -1.06
RTN3-201ENST00000338850 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.45□□□□□ -1.06
RTN3-201ENST00000338850 IGHV3-72A0A0B4J1Y9 119 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 A0A1B0GUT8 65 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 SRD5A1P18405 259 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 PSG9Q00887 426 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 PSG3Q16557 428 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 KRTAP24-1Q3LI83 254 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 RUSC1-AS1Q66K80 236 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 EBLN2Q6P2I7 272 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 RNASEKQ6P5S7 137 aaKnown RBP8.45□□□□□ -1.06
RTN3-201ENST00000338850 TTC9CQ8N5M4 171 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 Q8N6K4 173 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 TMEM208Q9BTX3 173 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 MS4A6AQ9H2W1 248 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 LAMTOR2Q9Y2Q5 125 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 PLXNB1O43157 2135 aa8.45□□□□□ -1.06
RTN3-201ENST00000338850 SH2D7A6NKC9 451 aaPredicted RBP8.44□□□□□ -1.06
RTN3-201ENST00000338850 CHEK1O14757 476 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 TIMM23O14925 209 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 TGFAP01135 160 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 NTF3P20783 257 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 TSPOP30536 169 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 RAB9AP51151 201 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 MFAP4P55083 255 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 RPS20P60866 119 aaKnown RBP8.44□□□□□ -1.06
RTN3-201ENST00000338850 C5orf64Q2M2E5 130 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 ZNF562Q6V9R5 426 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 TCF24Q7RTU0 167 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 FAM19A2Q8N3H0 131 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 OR2D3Q8NGH3 330 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 ORAOV1Q8WV07 137 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 ZNF414Q96IQ9 312 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 ATP6V0BQ99437 205 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 TMEM191AQ9H0A3 160 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 THYN1Q9P016 225 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 HSPB8Q9UJY1 196 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 PSG8Q9UQ74 426 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 GOLT1BQ9Y3E0 138 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 CUBNO60494 3623 aa8.44□□□□□ -1.06
RTN3-201ENST00000338850 IGHV1-24A0A0C4DH33 117 aa8.43□□□□□ -1.06
RTN3-201ENST00000338850 LYNX1G3V0Z9 82 aa8.43□□□□□ -1.06
RTN3-201ENST00000338850 SYS1-DBNDD2H3BUS1 97 aa8.43□□□□□ -1.06
RTN3-201ENST00000338850 NDUFB8O95169 186 aa8.43□□□□□ -1.06
RTN3-201ENST00000338850 IGHV3-48P01763 117 aa8.43□□□□□ -1.06
RTN3-201ENST00000338850 LYNX1P0DP58 116 aa8.43□□□□□ -1.06
RTN3-201ENST00000338850 ZNF25P17030 456 aaPredicted RBP8.43□□□□□ -1.06
RTN3-201ENST00000338850 RPL7P18124 248 aaKnown RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms