RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 DIRC3C9JPN6 131 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 M0R3E3 92 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 CSN3P07498 182 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 EDN2P20800 178 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 CSN1S1P47710 185 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 RPL23P62829 140 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 GNG5P63218 68 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 CENPWQ5EE01 88 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 ATRAIDQ6UW56 229 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 LINC01551Q86U37 167 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 CITED1Q99966 193 aa11.27□□□□□ -0.61
CCDC88C-202ENST00000334448 A0A087WWC5 75 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 A0A1W2PRX2 142 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 RBAKDNA6NC62 111 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 K7EQM0 130 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 IGLV2-11P01706 119 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 GNG4P50150 75 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 DCANP1Q8TF63 244 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 DUX3Q96PT4 197 aa11.26□□□□□ -0.61
CCDC88C-202ENST00000334448 OVOL1O14753 267 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 TSPAN4O14817 238 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 LTAP01374 205 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 IGLV2-8P01709 118 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 PSG3Q16557 428 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 LCN12Q6JVE5 192 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 GOLT1AQ6ZVE7 132 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 Q86TA4 180 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 MLST8Q9BVC4 326 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 ATRQ13535 2644 aa11.25□□□□□ -0.61
CCDC88C-202ENST00000334448 TRAV25A0A0B4J276 109 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 C7orf77A4D0Y5 90 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 M0R036 132 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 UBE2G1P62253 170 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 HIST2H2BDQ6DRA6 164 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 COX8CQ7Z4L0 72 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 ISOC2Q96AB3 205 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 C16orf92Q96LL3 132 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 LINC00479Q96M42 142 aa11.24□□□□□ -0.61
CCDC88C-202ENST00000334448 K7EQG2 157 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 ADIRFQ15847 76 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 KRTAP24-1Q3LI83 254 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 OCC1Q8TAD7 63 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 MS4A6AQ9H2W1 248 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 TMEM242Q9NWH2 141 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 PPP1R14DQ9NXH3 145 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 ZFP30Q9Y2G7 519 aa11.23□□□□□ -0.61
CCDC88C-202ENST00000334448 K7EN84 100 aa11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 GCGP01275 180 aa11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 HLA-DMBP28068 263 aa11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 ID1P41134 155 aa11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 FLI1Q01543 452 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 DEFB114Q30KQ6 69 aa11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 BAGE2Q86Y30 109 aa11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 CTDSP1Q9GZU7 261 aa11.22□□□□□ -0.61
CCDC88C-202ENST00000334448 TRAV34A0A0B4J273 112 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 MT-ND4LP03901 98 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 PAFAH1B2P68402 229 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 NSUN5P1Q3KNT7 163 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 C9orf47Q6ZRZ4 202 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 PRIMA1Q86XR5 153 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 TMEM183AQ8IXX5 376 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 RNF182Q8N6D2 247 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 LINC00482Q8N8I6 264 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 OR2K2Q8NGT1 345 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 C20orf173Q96LM9 149 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 TUBA4BQ9H853 241 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 RPH3ALQ9UNE2 315 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 PSG8Q9UQ74 426 aa11.21□□□□□ -0.61
CCDC88C-202ENST00000334448 TRAV8-1A0A0A6YYK1 113 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 CXorf65A6NEN9 183 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 PGPEP1LA6NFU8 196 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 ZNF705FA8MVS1 300 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 PRAC2D3DTV9 90 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 PPP1R2P9O14990 202 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 RPL11P62913 178 aaKnown RBP11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 IGFL4Q6B9Z1 124 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 FAM231DQ6ZW35 169 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 DYNLRB2Q8TF09 96 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 ANAPC16Q96DE5 110 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 BIN3Q9NQY0 253 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 LENEPQ9Y5L5 61 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 TENM1Q9UKZ4 2725 aa11.2□□□□□ -0.62
CCDC88C-202ENST00000334448 IGKV2-40A0A087WW87 121 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 TRBV7-9A0A0J9YWB2 115 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 NPIPB6E9PJ23 425 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 SCO1O75880 301 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 IGKV2D-40P01614 121 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 RNF212Q495C1 297 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 SAPCD1Q5SSQ6 148 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 TMEM61Q8N0U2 210 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 ZNF738Q8NE65 137 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 SFRP2Q96HF1 295 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 SPAG8Q99932 426 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 ZNF747Q9BV97 191 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 RPS10P5Q9NQ39 176 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 OSTCQ9NRP0 149 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 SMCO4Q9NRQ5 59 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 ZNF492Q9P255 531 aa11.19□□□□□ -0.62
CCDC88C-202ENST00000334448 DNASE2O00115 360 aaPredicted RBP11.18□□□□□ -0.62
CCDC88C-202ENST00000334448 SNRPD3P62318 126 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms