RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PHLDA1Q8WV24 401 aaPredicted RBP10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 SIVA1O15304 175 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 C8orf46Q8TAG6 207 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 CHAC1Q9BUX1 264 aa10.64□□□□□ -0.71
CCDC88C-201ENST00000331194 TMEM189A5PLL7 270 aa10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 OTORQ9NRC9 128 aa10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 PSG8Q9UQ74 426 aa10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 ZGRF1Q86YA3 2104 aa10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 SPTAN1Q13813 2472 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 HERV-K104P63124 156 aa10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 FER1L6-AS2Q96M78 137 aa10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 SLC25A39Q9BZJ4 359 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 HIGD1AQ9Y241 93 aa10.63□□□□□ -0.71
CCDC88C-201ENST00000331194 J3QR89 54 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 IGLV1-44P01699 117 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 WT1P19544 449 aaPredicted RBP10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 PAX8Q06710 450 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 MRGPRG-AS1Q2M3A8 158 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 FAM104BQ5XKR9 115 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 ORMDL3Q8N138 153 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 OR4C13Q8NGP0 309 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 OR10X1Q8NGY0 326 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 TMEM133Q9H2Q1 129 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 MSRB1Q9NZV6 116 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 MALRD1Q5VYJ5 2156 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 WNK2Q9Y3S1 2297 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 FCN3O75636 299 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 SPRY4Q9C004 299 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 PGPEP1Q9NXJ5 209 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 RNF7Q9UBF6 113 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 HHLA3Q9XRX5 114 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 TRBV25-1A0A075B6N4 114 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 RBP4P02753 201 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 CKS2P33552 79 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 MZT1Q08AG7 82 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 S4R3C0 116 aa10.62□□□□□ -0.71
CCDC88C-201ENST00000331194 CNIH1O95406 144 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 CCL11P51671 97 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 ZNF562Q6V9R5 426 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 RNF183Q96D59 192 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 TRGV9Q99603 122 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 CRYGCP07315 174 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 PRSS1P07477 247 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 EVI2AP22794 236 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 MAPKAPK5-AS1Q8N8E1 139 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 SPATA25Q9BR10 227 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 SRSF8Q9BRL6 282 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 COL6A6A6NMZ7 2263 aa10.61□□□□□ -0.71
CCDC88C-201ENST00000331194 GATA1P15976 413 aaPredicted RBP10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 CCL8P80075 99 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 PRR33A8MZF0 331 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 IGLL5B9A064 214 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 FCER1GP30273 86 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 TCF15Q12870 199 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 C20orf78Q9BR46 151 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 RAB9BQ9NP90 201 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 PRRG2O14669 202 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 TNFAIP6P98066 277 aaPredicted RBP10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 TWIST1Q15672 202 aa10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 ZNF71Q9NQZ8 489 aaPredicted RBP10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 MRPL16Q9NX20 251 aaKnown RBP10.6□□□□□ -0.71
CCDC88C-201ENST00000331194 HOXB4P17483 251 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 LEPP41159 167 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 FOXI2Q6ZQN5 318 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 INS-IGF2F8WCM5 200 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 TSPAN13O95857 204 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 ODF1Q14990 250 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 ZC2HC1BQ5TFG8 222 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 TMEM200BQ69YZ2 307 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 ZNF493Q6ZR52 646 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 TMEM75Q8N9X5 138 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 U3KQK5 164 aa10.59□□□□□ -0.71
CCDC88C-201ENST00000331194 ZNF883P0CG24 379 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 SFTA2Q6UW10 78 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 C1orf122Q6ZSJ8 110 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 CEND1Q8N111 149 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 TMEM160Q9NX00 188 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 TRBV19A0A075B6N1 114 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 E9PLD3 99 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 IGHV1-46P01743 117 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 SIGLEC15Q6ZMC9 328 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 C22orf34Q6ZV56 151 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 GATD1Q8NB37 220 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 FOXC2Q99958 501 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 SLC25A15Q9Y619 301 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 MAP1AP78559 2803 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 IGFL4Q6B9Z1 124 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 FAM169BQ8N8A8 192 aa10.58□□□□□ -0.72
CCDC88C-201ENST00000331194 ASH1LQ9NR48 2969 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 SH2D1AO60880 128 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 SPINK8P0C7L1 97 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 PRSS33Q8NF86 280 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 LINC00574Q9H8X3 128 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 NGBQ9NPG2 151 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 CACNA1BQ00975 2339 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 TRAV40A0A0B4J280 105 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 B5MCH6 92 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 Q8TAT8 98 aa10.57□□□□□ -0.72
CCDC88C-201ENST00000331194 LRBAP50851 2863 aa10.56□□□□□ -0.72
CCDC88C-201ENST00000331194 IGKV2-40A0A087WW87 121 aaPredicted RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms