RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 Q1RN00 199 aa7.34□□□□□ -1.23
TMEM39A-201ENST00000319172 LY6G5BQ8NDX9 201 aa7.34□□□□□ -1.23
TMEM39A-201ENST00000319172 OR8A1Q8NGG7 326 aa7.34□□□□□ -1.23
TMEM39A-201ENST00000319172 LYPD6BQ8NI32 183 aa7.34□□□□□ -1.23
TMEM39A-201ENST00000319172 ZFP30Q9Y2G7 519 aa7.34□□□□□ -1.23
TMEM39A-201ENST00000319172 AKAP13Q12802 2813 aa7.34□□□□□ -1.23
TMEM39A-201ENST00000319172 HIST1H2BKO60814 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BJP06899 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BOP23527 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BBP33778 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BDP58876 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BCP62807 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 ZNF56Q15929 161 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST2H2BEQ16778 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 THAP8Q8NA92 274 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 KLHL30-AS1Q8NEE0 82 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BHQ93079 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BNQ99877 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 HIST1H2BMQ99879 126 aa7.34□□□□□ -1.24
TMEM39A-201ENST00000319172 FAM223BA6NKX1 122 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 FABP5P3A8MUU1 101 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 NPIPB6E9PJ23 425 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 K7EIM0 57 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 ODF1Q14990 250 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 PSMG4Q5JS54 123 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 FAM223AQ8IWN6 122 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 RNF182Q8N6D2 247 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 DUX3Q96PT4 197 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 LINC01587Q99440 93 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 PEF1Q9UBV8 284 aaKnown RBP7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 IZUMO1RA6ND01 250 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 IGKV1-17P01599 117 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 LCN12Q6JVE5 192 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 STHQ8IWL8 128 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 ZNF491Q8N8L2 437 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 GSN-AS1Q9NRJ2 163 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 TRBV24-1A0A075B6N3 115 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 TEX22C9J3V5 150 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 PAX1P15863 534 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 TTC9CQ8N5M4 171 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 NPBQ8NG41 125 aa7.33□□□□□ -1.24
TMEM39A-201ENST00000319172 TRGV2A0A075B6R0 118 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 FER1L6-AS1Q8NA97 138 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 C17orf77Q96MU5 243 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 TMEM242Q9NWH2 141 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 PAM16Q9Y3D7 125 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 A0A1B0GV72 72 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 J3QLI3 93 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 TCTAP57738 103 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 KLK15Q9H2R5 256 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 I3L2K1 104 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 ADMP35318 185 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 SMIM12Q96EX1 92 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 NACAE9PAV3 2078 aa7.32□□□□□ -1.24
TMEM39A-201ENST00000319172 TRBV9A0A0B4J1U6 114 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 ERCC8Q13216 396 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 PATE2Q6UY27 113 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 SCGB1D4Q6XE38 83 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 TMEM136Q6ZRR5 245 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 BCL6BQ8N143 479 aaPredicted RBP7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 KLHDC1Q8N7A1 406 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 FXYD5Q96DB9 178 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 SOX21Q9Y651 276 aaPredicted RBP7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 TRBV19A0A075B6N1 114 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 TMEM183BQ1AE95 376 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 GFI1BQ5VTD9 330 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 MYOZ3Q8TDC0 251 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 TSKUQ8WUA8 353 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 DIRC3C9JPN6 131 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 UBE2L6O14933 153 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 FCN3O75636 299 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 CDKN1BP46527 198 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 FAM19A2Q8N3H0 131 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 DPH3Q96FX2 82 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 DAZ1Q9NQZ3 744 aaKnown RBP7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 OR4C46A6NHA9 309 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 C12orf54Q6X4T0 127 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 GTSCR1Q86UQ5 136 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 TMEM183AQ8IXX5 376 aa7.31□□□□□ -1.24
TMEM39A-201ENST00000319172 TMEM262E9PQX1 116 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 IGLV11-55A0A075B6I3 123 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 LINC01548A6NM66 108 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 PSG3Q16557 428 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 C10orf91Q5T1B1 145 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 TRBV20OR9-2A0A075B6H5 130 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 ODF3BA8MYP8 253 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 H3BRN7 92 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 ASIPP42127 132 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 FOXL1Q12952 345 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 Q86TA4 180 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 BBC3Q96PG8 261 aaPredicted RBP7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 MAP1LC3CQ9BXW4 147 aa7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 ANKRD17O75179 2603 aaKnown RBP7.3□□□□□ -1.24
TMEM39A-201ENST00000319172 SERF1AO75920 110 aa7.29□□□□□ -1.24
TMEM39A-201ENST00000319172 C5orf56Q8N8D9 126 aa7.29□□□□□ -1.24
TMEM39A-201ENST00000319172 CRXO43186 299 aaPredicted RBP7.29□□□□□ -1.24
TMEM39A-201ENST00000319172 NDUFA3O95167 84 aa7.29□□□□□ -1.24
TMEM39A-201ENST00000319172 LEPROTL1O95214 131 aa7.29□□□□□ -1.24
TMEM39A-201ENST00000319172 HLA-DMBP28068 263 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms