RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 GAFA1Q96PS6 74 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 DAZ1Q9NQZ3 744 aaKnown RBP6.22□□□□□ -1.41
SF3B3-201ENST00000302516 GATA4P43694 442 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 LGALS9BQ3B8N2 356 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 LGALS9CQ6DKI2 356 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 WIPF2Q8TF74 440 aaPredicted RBP6.22□□□□□ -1.41
SF3B3-201ENST00000302516 NOTCH4Q99466 2003 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 C9JAW5 83 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 I3L3M4 83 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 FAM104BQ5XKR9 115 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 PCNX2A6NKB5 2137 aa6.22□□□□□ -1.41
SF3B3-201ENST00000302516 NTN3O00634 580 aaPredicted RBP6.21□□□□□ -1.41
SF3B3-201ENST00000302516 MED13Q9UHV7 2174 aa6.21□□□□□ -1.41
SF3B3-201ENST00000302516 RSPO4Q2I0M5 234 aaPredicted RBP6.21□□□□□ -1.41
SF3B3-201ENST00000302516 HLA-DMBP28068 263 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 DMRTC2Q8IXT2 367 aaPredicted RBP6.21□□□□□ -1.42
SF3B3-201ENST00000302516 RSPO3Q9BXY4 272 aaPredicted RBP6.21□□□□□ -1.42
SF3B3-201ENST00000302516 CEND1Q8N111 149 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 Q8TCH9 128 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 TRAV8-3A0A0A6YYJ7 113 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 A0A1W2PPM0 123 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 ZNF876PQ49A33 203 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 HAPLN4Q86UW8 402 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 ATG2AQ2TAZ0 1938 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 A0A087WX48 190 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 PSPNO60542 156 aa6.21□□□□□ -1.42
SF3B3-201ENST00000302516 C14orf178Q8N769 122 aaPredicted RBP6.21□□□□□ -1.42
SF3B3-201ENST00000302516 RBMY1FQ15415 496 aaKnown RBP6.2□□□□□ -1.42
SF3B3-201ENST00000302516 ATP6V0BQ99437 205 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 SNHG12Q9BXW3 62 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 IGLC2P0DOY2 106 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 IGLC3P0DOY3 106 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 EFNA4P52798 201 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 AMN1Q8IY45 258 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 ZNF474Q6S9Z5 364 aaPredicted RBP6.2□□□□□ -1.42
SF3B3-201ENST00000302516 FGFBP3Q8TAT2 258 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 CACNA1HO95180 2353 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 K7EP13 123 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 PPIFP30405 207 aaKnown RBP6.2□□□□□ -1.42
SF3B3-201ENST00000302516 RPL32P62910 135 aaKnown RBP6.2□□□□□ -1.42
SF3B3-201ENST00000302516 TRAV13-2A0A0B4J235 113 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 SLAQ13239 276 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 PRIMA1Q86XR5 153 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 NDUFA4L2Q9NRX3 87 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 TRAV3A0A0B4J244 114 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 TRACP01848 142 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 CSRP1P21291 193 aaKnown RBP6.2□□□□□ -1.42
SF3B3-201ENST00000302516 ZNF833PQ6ZTB9 187 aa6.2□□□□□ -1.42
SF3B3-201ENST00000302516 TRGV1A0A0A0MS02 117 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 HLA-DRB4P13762 266 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 SSC4DQ8WTU2 575 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 HLA-DRB4X5D2U9 266 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 V9GYV3 84 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 PLXNB1O43157 2135 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 GATA3P23771 443 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 C17orf82Q86X59 251 aaPredicted RBP6.19□□□□□ -1.42
SF3B3-201ENST00000302516 MED12LQ86YW9 2145 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 TRAV40A0A0B4J280 105 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.19□□□□□ -1.42
SF3B3-201ENST00000302516 C11orf52Q96A22 123 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 PYGO2Q9BRQ0 406 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 LMO1P25800 156 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 KLF5Q13887 457 aaPredicted RBP6.19□□□□□ -1.42
SF3B3-201ENST00000302516 Q6ZWC4 215 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 IGKV1D-17A0A075B6S4 117 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 E9PQ18 207 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 C6orf226Q5I0X4 101 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 Q8TAT8 98 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 UBL5Q9BZL1 73 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 VWCEQ96DN2 955 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 ZNF48Q96MX3 618 aaPredicted RBP6.19□□□□□ -1.42
SF3B3-201ENST00000302516 C20orf78Q9BR46 151 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 H3BQ85 93 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 ETV2O00321 342 aaPredicted RBP6.19□□□□□ -1.42
SF3B3-201ENST00000302516 TP53TG1Q9Y2A0 90 aa6.19□□□□□ -1.42
SF3B3-201ENST00000302516 ACYP1P07311 99 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 TRBV19A0A075B6N1 114 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 ZNF672Q499Z4 452 aaPredicted RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 ARMS2P0C7Q2 107 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 NPC2P61916 151 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 LYPD6BQ8NI32 183 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 MBD3L4A6NDZ8 208 aaPredicted RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 MBD3L3A6NE82 208 aaPredicted RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 MBD3L5A6NJ08 208 aaPredicted RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 MDS2Q8NDY4 140 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 MBD3L2Q8NHZ7 208 aaPredicted RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 RNF166Q96A37 237 aaPredicted RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 EFNA2O43921 213 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 FAM110DQ8TAY7 271 aaPredicted RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 ABCA4P78363 2273 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 PINLYPA6NC86 204 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 B4DSR2 109 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 BMPERQ8N8U9 685 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 CDKN1BP46527 198 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 CITED1Q99966 193 aa6.18□□□□□ -1.42
SF3B3-201ENST00000302516 NAA38Q9BRA0 125 aaKnown RBP6.18□□□□□ -1.42
SF3B3-201ENST00000302516 GAGE12HA6NDE8 117 aa6.17□□□□□ -1.42
SF3B3-201ENST00000302516 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.17□□□□□ -1.42
SF3B3-201ENST00000302516 FREM1Q5H8C1 2179 aa6.17□□□□□ -1.42
SF3B3-201ENST00000302516 PRO1854Q9UHT4 67 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms