RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SRSF8Q9BRL6 282 aaKnown RBP10.66□□□□□ -0.7
SKA3-201ENST00000298260 A0A1B0GWB2 263 aa10.65□□□□□ -0.7
SKA3-201ENST00000298260 PAX8Q06710 450 aa10.65□□□□□ -0.7
SKA3-201ENST00000298260 FAM104BQ5XKR9 115 aa10.65□□□□□ -0.7
SKA3-201ENST00000298260 Q6ZT83 130 aa10.65□□□□□ -0.7
SKA3-201ENST00000298260 TMEM75Q8N9X5 138 aa10.65□□□□□ -0.7
SKA3-201ENST00000298260 TMEM133Q9H2Q1 129 aa10.65□□□□□ -0.7
SKA3-201ENST00000298260 TMEM160Q9NX00 188 aa10.65□□□□□ -0.7
SKA3-201ENST00000298260 E9PLD3 99 aa10.65□□□□□ -0.71
SKA3-201ENST00000298260 MT-ATP8P03928 68 aa10.65□□□□□ -0.71
SKA3-201ENST00000298260 FHL3Q13643 280 aa10.65□□□□□ -0.71
SKA3-201ENST00000298260 FOXC2Q99958 501 aa10.65□□□□□ -0.71
SKA3-201ENST00000298260 PSG8Q9UQ74 426 aa10.65□□□□□ -0.71
SKA3-201ENST00000298260 MC5RP33032 325 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 LEPP41159 167 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 SRSF6Q13247 344 aaKnown RBP10.64□□□□□ -0.71
SKA3-201ENST00000298260 CEND1Q8N111 149 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 SYT8Q8NBV8 401 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 PTH2Q96A98 100 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 RBP4P02753 201 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 ODF1Q14990 250 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 GAGE13Q4V321 117 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 PRSS33Q8NF86 280 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 GAFA1Q96PS6 74 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 CACNA1BQ00975 2339 aa10.64□□□□□ -0.71
SKA3-201ENST00000298260 TWIST1Q15672 202 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 IGFL4Q6B9Z1 124 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 OSR1Q8TAX0 266 aaPredicted RBP10.63□□□□□ -0.71
SKA3-201ENST00000298260 SLC25A39Q9BZJ4 359 aaPredicted RBP10.63□□□□□ -0.71
SKA3-201ENST00000298260 SS18L2Q9UHA2 77 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 HIGD1AQ9Y241 93 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 PCNX1Q96RV3 2341 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 TRAV40A0A0B4J280 105 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 NPIPB5A8MRT5 1133 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 F8W1H4 67 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 SUB1P53999 127 aaKnown RBP eCLIP10.63□□□□□ -0.71
SKA3-201ENST00000298260 OTORQ9NRC9 128 aa10.63□□□□□ -0.71
SKA3-201ENST00000298260 J3QR89 54 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 IGLV2-23P01705 113 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 C12orf74Q32Q52 190 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 C9orf106Q8NAJ2 232 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 C8orf46Q8TAG6 207 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 Q8TAT8 98 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 PIEZO1Q92508 2521 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 TMEM8BA6NDV4 472 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 MBNL2Q5VZF2 373 aaKnown RBP10.62□□□□□ -0.71
SKA3-201ENST00000298260 TMEM178AQ8NBL3 297 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 MRAP2Q96G30 205 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 MALRD1Q5VYJ5 2156 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 ATRXP46100 2492 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 KLRC4-KLRK1H3BQV0 150 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 M0R1B8 84 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 LHBP01229 141 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 SPINK8P0C7L1 97 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 OR10X1Q8NGY0 326 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 RNF183Q96D59 192 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 PRO0461Q9UI25 63 aa10.62□□□□□ -0.71
SKA3-201ENST00000298260 APOMO95445 188 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 WT1P19544 449 aaPredicted RBP10.61□□□□□ -0.71
SKA3-201ENST00000298260 ATP5IP56385 69 aaPredicted RBP10.61□□□□□ -0.71
SKA3-201ENST00000298260 MRGPRG-AS1Q2M3A8 158 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 ZNF833PQ6ZTB9 187 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 NFE4Q86UQ8 179 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 TMEM167AQ8TBQ9 72 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 IGFBPL1Q8WX77 278 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 FCN3O75636 299 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 ANXA2RQ3ZCQ2 193 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 OR4C13Q8NGP0 309 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 HIST1H4GQ99525 98 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 ZNF71Q9NQZ8 489 aaPredicted RBP10.61□□□□□ -0.71
SKA3-201ENST00000298260 CTSZQ9UBR2 303 aa10.61□□□□□ -0.71
SKA3-201ENST00000298260 IGKV2-40A0A087WW87 121 aaPredicted RBP10.6□□□□□ -0.71
SKA3-201ENST00000298260 TGFAP01135 160 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 IGKV2D-40P01614 121 aaPredicted RBP10.6□□□□□ -0.71
SKA3-201ENST00000298260 CDIP1Q9H305 208 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 SH2D1AO60880 128 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 IGKCP01834 107 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 XGP55808 180 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 CCL8P80075 99 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 ZNF493Q6ZR52 646 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 C8orf86Q6ZUL3 223 aa10.6□□□□□ -0.71
SKA3-201ENST00000298260 MRPL35Q9NZE8 188 aaKnown RBP10.6□□□□□ -0.71
SKA3-201ENST00000298260 MDS2Q8NDY4 140 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 ZNF418Q8TF45 676 aaPredicted RBP10.59□□□□□ -0.71
SKA3-201ENST00000298260 TRGV9Q99603 122 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 U3KQK5 164 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 NDUFA3O95167 84 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 CRYGCP07315 174 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 SMCPP49901 116 aaPredicted RBP10.59□□□□□ -0.71
SKA3-201ENST00000298260 SIGLEC15Q6ZMC9 328 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 TMEM158Q8WZ71 300 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 TM2D2Q9BX73 214 aa10.59□□□□□ -0.71
SKA3-201ENST00000298260 TRBV19A0A075B6N1 114 aa10.58□□□□□ -0.72
SKA3-201ENST00000298260 CT45A10P0DMU9 189 aa10.58□□□□□ -0.72
SKA3-201ENST00000298260 EGR2P11161 476 aaPredicted RBP10.58□□□□□ -0.72
SKA3-201ENST00000298260 HOXB4P17483 251 aaPredicted RBP10.58□□□□□ -0.72
SKA3-201ENST00000298260 ZNF80P51504 273 aaPredicted RBP10.58□□□□□ -0.72
SKA3-201ENST00000298260 ZNF48Q96MX3 618 aaPredicted RBP10.58□□□□□ -0.72
SKA3-201ENST00000298260 IGHV3OR16-8A0A075B7F1 116 aa10.58□□□□□ -0.72
SKA3-201ENST00000298260 TCTEX1D4Q5JR98 221 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms